Takifugu rubripes (torafugu): 101063822
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Entry
101063822 CDS
T02386
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101063822
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101063822
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101063822
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101063822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101063822
NCBI-ProteinID:
XP_011612331
LinkDB
All DBs
Position
19:11353553..11380429
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AA seq
1488 aa
AA seq
DB search
MFSFMDSRIVLLLVASQVCLLTVVRCQEEDDQATLSCMQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCRNPEIPFGECCPICAADQSPPIGVPGAKGQKGEPGDITDVVG
PRGPAGPMGPSGEQGPRGTRGEKGERGSAGPRGRDGEPGTPGNPGSPGPPGPPGLGGNFA
AQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGDAGEPGAAGPM
GPRGPPGPSGKAGEDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYSGIDGAK
GETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPGPV
GPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAK
GSAGAHGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPAGLQ
GAPGQQGEEGKRGPRGEPGAAGPIGPPGERGAPGNRGFPGQDGLAGSKGAPGERGTSGAS
GPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGASGEPGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGLAGERGEQGQP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGASGTTGPRGERGFPGERGAAGPQGLQGPR
GLPGTPGTDGPKGAIGPHGSLGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPEGAP
GKDGARGLTGPIGPPGPSGPNGEKGETGPAGPSGAPGTRGTPGDRGETGSLGPAGFAGPP
GSDGQPGIKGEQGETGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPAGPAGSPGKDGPKGIRGDGGPPGRQGDAGLRGPAGPSGEKGDA
GEDGPVGPPGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGTGGDRGPP
GPVGPPGLTGPAGESGREGNPGSDGPPGRDGATGIKGDRGDTGPTGSPGAPGAPGAQGPV
GQTGKQGDRGESGSQGPAGAPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFTGLQ
GLPGPPGQAGDQGATGPAGPAGPRGPPGPVGPSGKDGAFGLPGPIGPPGPRGRSGETGPA
GPPGNSGPPGLPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVDATL
KSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVYCDMET
GETCVQPKPSSISRKNWWTSKSKDRKHVWFSETMNGGFHFSYGDDSLAPNTAAIQMTFLR
LLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVLEDGCT
KHTGQWGKTLIEYRSQKTSRLPIVDIAPMDIGEAHQEFGVEVGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggattgtactgctacttgtagcatcccaagtgtgtcta
ttaaccgttgtgagatgtcaggaagaagacgaccaggccactcttagctgtatgcaggat
ggacagcgctatagcgacaaggacgtgtggaagcccgagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgcgatgaaattgtctgcgaggagctaaaagactgccgcaat
ccagaaatcccattcggagagtgttgccccatctgcgcagctgaccagtcgccacccatc
ggagtacctggagcaaagggtcagaaaggtgaaccaggagacatcactgatgttgtggga
ccgagaggaccggccggccccatgggcccatctggagaacaaggaccccgcggaacaaga
ggagagaaaggagagaggggaagtgctggccctcgtggcagagatggtgagcctggcacc
cctggaaaccctgggagcccaggacctcccggccctcctgggctcggtggaaactttgct
gctcagatggccggtggtttcgacgagaaggctggcggtggcgcccagatgggtgtgatg
caaggaccaatgggccccatgggtcccagaggaccacctggaccatccggagcccctggc
ccacaaggtttccaaggcagccctggagacgcaggagagcctggagcagctggacccatg
ggtccccgtggccctcctggaccctctggaaaggctggagaagatggtgaggctggaaaa
cctggcaaatcaggtgagcgtggacctactggacctcagggagctcgtggattcccagga
actcctggcctgcctggaatcaagggacacagaggttactctggtattgatggtgcaaag
ggagagactggagccgtcgggtccaagggtgagtctggtgccccaggagaaaatggagcc
cctggaccgatgggacctcgtggtttgcctggcgagagaggccgtcctgggcccagtggt
gttgccggtgcccgtggtaacgatggcctgcccggtcctgctggtcccccaggccctgta
ggtccatccggtgctccaggtttccccggctctcctggttctaaaggagaagcaggtcct
acgggtgctcgtggacctgagggggctcagggaccccgtggagagtctggcacgcctgga
tcacctggaccctccggagcctctggaaaccctggtactgacggaatacccggagctaaa
ggatcagctggtgctcatggtattgctggtgctcctggtttccccggccctcgtggacca
cctggacctcagggggcaactggaccactcggacccaaaggaacatctggagatcctggt
attgcaggattcaagggagaagctggacccaaaggagagattggacccgctggtcttcaa
ggagctcccggacaacaaggtgaagaaggaaagagggggcccaggggtgagcctggtgct
gctggacctattggaccacctggagagagaggagctcctggtaaccgtggtttccctggt
caggatggtctggctgggtcaaagggagcccctggggagcgtggaacctccggtgccagt
gggcctaaaggtgcaaacggtgaccctggccgtcctggagaatctggtttgcctggtgcc
agaggcctgaccggacgtcccggggatgccgggcctcaggggaaagttggaccttctgga
gctcctggtgaggatggacgtcccggacccccgggcccccagggagcccgcggacagcct
ggtgtcatgggattccccggtcccaagggagcgtctggtgaacctggcaagtctggggag
aaaggtctggctggagcgcctggtctcagaggtcttcccggcaaagatggcgaaaccggc
gctgccggaccccctggccccgctggtcttgctggtgagcgaggagagcagggacagcct
ggtccctcaggtttccagggtctgccaggacctcctggccccccaggagagggcggcaag
cctggagatcagggtgtccctggagaggctggagcctctggtaccaccgggccccggggg
gagcgcggattccccggcgagagaggagctgccggtccccagggtctgcagggccctcga
ggtcttcctggaactccaggaactgatggacccaagggagccatcggtcctcacggctcc
cttggagctcaaggaccccccggtctgcagggtatgcccggagagagaggaggcgccggc
attcccggacccaaaggagacagaggcgaccttggagagaaaggccccgagggtgctcca
ggcaaagatggtgcccggggtcttactggtcccattggtcctcctgggccctctggtcct
aatggcgagaagggtgaaactggtcccgcaggtccttctggagctcctggtacccgtggt
actcctggtgaccgaggtgagaccggatctctcgggcctgcaggatttgctggaccgcct
ggttctgacggtcagcctggaatcaagggcgagcagggagagactggacagaagggagac
gccggtgccccaggaccccaagggccctctggtgctcctggacctgctggtcctacgggt
gtttctggacctaaaggcgcccgtggagctcagggacctcctggtgccactggtttcccc
ggcgctgctggtcgagtaggacccccaggtcctaacggtaatcctggacctgctggtcct
gccggttctcctggtaaagatggacccaagggcataaggggagatggtggccccccgggt
agacagggtgatgctggccttcgaggtcccgctgggccttctggagaaaaaggagatgct
ggcgaggacggtccagttggtcccccaggcccctcaggccctcagggtttgggtggtcag
cgcggtatcgtcggtctgcctggacagcgtggagagagaggtttccctggtcttcctgga
ccttctggtgagcctgggaaacagggagctcctggtaccggtggagaccgtggaccccct
ggacccgtcggaccgcccggtctgaccggtcctgctggagagtccggtagagagggaaac
ccaggatctgacggtcctcctggaagagacggtgctactggaatcaagggtgatcgcggt
gacaccggtcctactggatcacctggtgctccaggcgcacctggtgcacagggtccagtc
gggcaaaccggcaagcagggagacagaggagagtctggttcccaaggacctgctggagcc
ccaggaccagctggagccagaggaatgccaggacctcaaggaccccgtggtgacaagggt
gagggtggagagtctggtgagagaggacagaagggacaccgaggtttcacaggtctgcag
ggtcttcccggacctccgggccaagctggagatcagggtgctactggacctgctggacct
gctggaccaagaggaccacccggacctgtcggcccctcaggaaaggacggagcatttggt
ttgcctggacccatcggacctcctggaccacgtggtcgaagtggagaaaccggtcctgcc
ggtccccctggaaactctggaccacctggtcttcctggaccccctggtcctggcattgac
atgtccgcctttgccggactgggtcagaccgagaagggtcccgaccctctcaggtacatg
cgggccgaccaggcctctggaaacctgcggcagcacgacgccgaggtcgatgccacgctc
aagtctctcaacaaccagatcgagaacatccgcagccccgagggatccaagaagaatcct
gctcgcacctgcagggacctgaagctctgccaccctgactggaagagcggagagtactgg
atcgatcctaaccagggatgcaccgtcgacgccatcaaggtctactgcgacatggaaacg
ggagaaacctgcgtccagcccaagccatcaagcatctcgcgcaagaactggtggaccagc
aagagcaaggaccgcaaacacgtctggttcagcgagacaatgaacggaggattccacttc
agctacggcgacgacagcctggcgccaaacaccgccgccatccagatgactttcctgagg
ctgctctccactgaggcctctcagaacctcacctaccactgcaagaacagcgtggcctac
atggacgcctctacgggcaacctgaagaaggccgtgctgctgcagggctccaacgacgtg
gagatcagagccgagggcaacagccgcttcacttacagcgtgttggaggacggctgcacg
aaacacacaggacagtggggcaagacgctgatcgaatatagatcgcagaagacctctcgc
ctgcccatcgtggacatcgcccccatggacattggcgaagcacatcaggagttcggagtg
gaggtcggcgcggtctgcttcttgtaa
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