Terriglobus saanensis: AciPR4_0886
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Entry
AciPR4_0886 CDS
T01408
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tsa
Terriglobus saanensis
Pathway
tsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AciPR4_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsa03019
]
AciPR4_0886
03009 Ribosome biogenesis [BR:
tsa03009
]
AciPR4_0886
Enzymes [BR:
tsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AciPR4_0886
Messenger RNA biogenesis [BR:
tsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AciPR4_0886
Ribosome biogenesis [BR:
tsa03009
]
Prokaryotic type
rRNA processing factors
AciPR4_0886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
BrnA_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ADV81719
UniProt:
E8V7M1
LinkDB
All DBs
Position
1055837..1059442
Genome browser
AA seq
1201 aa
AA seq
DB search
MSKEIFISSTPHETRLAIVENDALSEIYYERENEYTLAGSIYNGKVTRVLPGMQSSFVDI
GLERDAFLYVTDFMEEAGDSADFDTDSANGSGSKGERRPARALEARPETTVEGNPETRSE
GRNEGRNEGRGEGRRGGRRRRPNDRPDFNAPAQSTDEPQDFVAEEVPATPPVADGTDAEA
AEGSRRWRGRRGRRRGRGSREGAPETTPGVVAETDAEPLLYGQAEEANLDLNAEESSEET
YTEAPPEVQAAPEYTIERPRTERPEGRGGRDRGRGRDGRNGRGGRDQRGGREREPREERS
SFAAPVYGQEEDAPAGEPIILPGESISKYRVGGDPNPAPVVAPPTDVLSSGSSFEVKGWD
GGLVLPGETIRPRTPSAGGESRQESPRSSEPRRSETSQPKSEARPEGRTESRRDGRGGRN
EGRRDGRGGNRNDNRGNGRREDRPRNPRPDQPAVSATEFIPVLLSEVREEASLRPATSQN
YEQRVQPVETLPEHIPFVPTPVTTFQAPVIEEQKAAPVHEPVDTVAVSPVPEQKPAEPVE
FEPREGDAANRIDAPRSSFRRWRERRAAEKAAREAAKLAALEALNKPEPPAHEFTTMQPT
GELLSRNDPAHEAAIDAFSSPATPIAHEAAVQSVPLAGAVTTPVPAVHTHSFGQGMVEEE
EEFEEDDLQIESLHAHAEEDNEEMEEETLEGGPELGTLLREVSIEGRTRAANEEADDLED
TDEPFSEEDGESSEDSDATAPAAANGEGSPRRERSDRGDRGRRDSGRRDRNDRGGDRSGA
RRTGGSGGGGRGGRPRVQASDLPAISDLLKPGQEILVQIAKEPIAKKGARITSHIALPGR
FLVFMPTVNHTGVSRKISSDEERRRLKTILLSEKGDATGGFIVRTAADGASEEELRSDLR
FLINLWSDIKSRSESSKSPALIYHDLNLVERILRDQVGDNFSAIWVDTEAEYERVLRFLQ
RFQPSLIRRVKLYTKETPLFEQFGVTAEIDKALKSKVWLKSGGSIVINQTEALVAIDVNT
GKYVGKTTRLEDTIVKTNLDAIPEIVRQIRLRDLGGIIVIDFIDMDDRKNRNKVMQALDD
ELKTDRAPSKVLQFNDFGLVIITRKRVRQSLERTLSTQCTVCTGTGMVKSPITVANEIFI
EMRKMYRHMDKGDMMLRVHPEVVKTLKASGSRWLLDMEELTKKTILVKSDPSLSPEQFDI
H
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaaatttttatctcctcaacaccgcatgagacgcggctcgccatcgtcgaa
aacgatgccctttctgagatctactacgagcgcgagaacgagtacaccctcgctggctcc
atctataacggtaaagttacacgcgttcttcccggaatgcagtcctctttcgtagacatc
ggcctcgagcgcgatgccttcctttatgtcactgatttcatggaagaagctggagactcc
gccgacttcgacaccgatagtgcgaatggtagcggaagcaagggcgaacgccgtccggca
cgcgctctcgaagcccgtcccgaaacaaccgttgaaggtaatcctgaaacacgttccgaa
ggtcgtaacgagggtcgaaatgaaggccgcggagagggtcgccgtggtggacgccgtcgt
cgccccaatgatcgtccggatttcaacgcccccgcgcagagcacggatgaaccgcaggac
tttgtagcagaagaggtccccgccactccgcccgtagccgatggaaccgacgcggaagcc
gccgaaggcagccgccgctggcgcggtcgccgtggacgtcgtcgcggccgtggatcgcgc
gaaggcgcaccggagactactcccggagtggttgccgaaacggacgcagagccccttctt
tatggtcaggctgaagaagcaaatctggatctgaacgcagaggagagttcggaagagacc
tacaccgaagctcctcccgaggtgcaggccgcaccggagtacaccatagagcgtccccgc
acggagcgtcccgaaggccgtggcgggcgtgatcgtggtcgtggacgggatggccgcaat
ggccgtggtggacgcgatcagcgtggcggacgcgaacgtgagccgcgcgaagagcgcagc
agttttgccgcacctgtttacggacaggaagaagatgcaccagcaggcgaaccgatcatt
cttcccggcgagtccatttcaaagtaccgcgtcggtggcgatcctaaccccgcgcccgta
gtcgctccgcctaccgacgttctttcctcgggttcttcctttgaagtcaaaggatgggac
ggtggtcttgtacttcccggcgaaacgattcgcccacggacaccctccgcaggcggcgaa
tcccgtcaggaatcaccacgttcctcagagcctcgccgcagtgagacctcgcagccgaag
tcggaagctcgtcctgaaggccgaaccgaaagtcgccgcgatggtcgtggtggtcgtaac
gagggccgccgcgatggacgcggtggtaatcggaacgacaaccgtggaaacggacgccgc
gaggatcgcccacgcaatcctcgtccggaccagccagcagtctccgctaccgagttcatt
ccagtgcttctctcggaggtccgcgaggaagccagcctccgcccggcgacttcgcagaac
tatgagcagcgcgtacagccggttgagactttgccggagcacattccctttgttccgaca
ccggtcacgacctttcaggctccggtcatcgaagagcagaaagccgctccggtccacgag
cccgtcgatacggttgcggtcagcccggttccagaacagaagccagccgaaccggtggag
tttgaaccccgcgaaggcgatgcggccaaccgcatcgacgctccccgctccagcttccgc
cgctggcgcgagcgccgcgccgccgaaaaggctgcacgggaagccgccaagctcgccgct
ctggaagccctgaacaagcccgagccgcccgcacacgagttcaccaccatgcagcccacg
ggtgagcttctctcgcgcaacgaccccgctcacgaagctgcgatcgatgcgttttcgtct
cccgcaacccccatcgcccacgaagcagctgtgcagtcggttcctttggctggggctgta
acgactcccgtacccgctgtccatacccactccttcggccagggcatggtcgaagaagaa
gaggagttcgaggaagacgatcttcagatcgaatccctccatgctcacgccgaagaagat
aacgaagagatggaagaagagacgctcgaaggtggaccggaactcggtaccctgcttcgg
gaagtctcgatcgaaggccgtacccgtgctgccaatgaagaggccgacgatctggaagat
acagacgagcccttctccgaagaagacggcgaatcttccgaggactccgacgcaaccgct
cctgcagccgccaatggcgaaggcagcccacgccgtgagcggtcggaccgtggagatcgt
ggccgccgtgactcaggtcgccgtgaccgcaacgatcgtggtggagatcgcagcggagca
cgccgtaccggtggcagtggtggaggcggccgtggtggacgtcctcgtgtccaggcatcg
gaccttcccgcgatctctgacctgctcaagcccggtcaggagatcctcgttcagatcgcc
aaggagccgatcgccaagaagggtgcgcgtattacctcgcacatcgcccttcccggacgc
ttccttgtcttcatgccgacggtgaatcacaccggcgtctcgcggaagatctcttcggac
gaagagcgccgccgcctcaagacgattcttctctccgagaagggcgacgcaacgggcggc
ttcatcgtccgcaccgccgcagacggagccagcgaagaagagcttcgcagcgatcttcgc
ttcctcatcaacctctggtcggacatcaaatcccgctcagagtcttccaagtctccggcg
ctcatctaccacgatctcaacctcgtggagcgcatcctgcgcgaccaggtcggcgacaac
ttctccgccatctgggtcgacacggaagccgagtatgaacgcgtcctgcgcttcctgcag
cgcttccagccttcgctgatccgccgcgtcaagctctacaccaaggaaacgccgctcttt
gaacagttcggcgtaacggcggagatcgacaaggcgctcaagagtaaggtctggctcaag
tccggcggctccatcgtcatcaaccagacggaagccctcgtggccatcgacgtcaacacc
ggcaagtacgtcggcaagacgacgcggctcgaagacaccatcgtgaagaccaacctcgat
gccatcccggagatcgtccgccagattcgactgcgcgatctcggtggcatcatcgtcatc
gatttcatcgacatggacgaccgcaagaaccgcaacaaggtcatgcaggcgctcgacgat
gaactcaagacggatcgcgcaccctccaaggtgttgcagttcaatgacttcggtctcgtg
atcattacgcgcaaacgggttcgccagtctctggagcgcacgctttcgacgcaatgcacg
gtctgcaccggtacaggcatggttaagtcacccatcaccgtggcgaacgagatctttatc
gagatgcggaagatgtatcgccatatggataagggcgacatgatgctgcgggtgcatccc
gaggtcgtcaaaacgctgaaggcttccggctcacgctggctcctcgatatggaagagctc
accaagaaaaccatcctggtcaagagcgatcccagcctcagcccggagcagttcgacatc
cactag
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