Tsukamurella tyrosinosolvens: ASU32_01705
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Entry
ASU32_01705 CDS
T05267
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tsm
Tsukamurella tyrosinosolvens
Pathway
tsm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ASU32_01705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsm03400
]
ASU32_01705
Enzymes [BR:
tsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ASU32_01705
DNA repair and recombination proteins [BR:
tsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ASU32_01705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUN42767
LinkDB
All DBs
Position
complement(350735..353104)
Genome browser
AA seq
789 aa
AA seq
DB search
MRENREVDGVGVQLTNLDKVLYPATGTTKAEVIDYFQAIAPFALPHLRDRPLTRKRWPNG
VDKTAFFEKRLPSHAPAWIRRGSQFHSDGESQYPVIENAAGMVWLGQQAALELHVPQWAF
VPDGADPDRPEVPGPPNRLVLDLDPGPDVTLDDCAALALRIRELLAAMDMEGYPVTSGSK
GLHVYAPLPGGISANGARTVAHAIASQLEAESPELVTASMAKVQRGGRVFVDWSQNSASK
TTVAPYSLRGRDHPWVAAPRTWDELARPGLRQLEFGEVLARALADGDLLAGLDGADARPD
GAEAPSAPPPEPVDLGEYRAKRDARKTPEPFGGAPSQGDPIFVIQEHHARRLHYDFRLEH
DGVLASWAVPKNLPDDPDINHLAVRTEDHPMDYAAFEGSIPRGEYGGGDVTIWDHGTYEL
EKWRSNEVIVTLHGNRLQGKRYALIRTGDKNWLAHLTKDKSAPAKPAAGLAPDPMLPTES
AIDGLSAADWAFEGKWDGYRMITTVRGGTVSLRTRSGRTVTGEFPEFESLAADLDGMNVV
LDGEAVVLDPNGVPSFHLMAGGETRSGAVQLYLFDVLSLNGVDLTKRPWTVRRQVLEGLA
PLLEHDTAVSVPPLVDAATGAEAAALSAELGWEGVIAKRRDSPYLPGQRVRAWLKHKNWR
DLQVAIGGWKPGKGSRGGGIGSVLVGLPAETGLVYLGSVGSGFSDRDLAALAEELEPLRM
RRSPFTGPIDDPEARDAVWVLPKVIGDVRYSSLRRGGHLRQPSWRGFRRDLLPGDLPSAD
EAPWEGPGE
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atccgggagaaccgcgaggtcgacggcgtcggcgtgcagctgaccaacctcgacaaggtg
ctctaccccgccacgggcaccacgaaggccgaggtcatcgactacttccaggccatcgcc
ccgttcgccctcccccacctgcgcgaccggcccctcacccgcaagcgctggcccaacggc
gtggacaagaccgccttcttcgagaagcggctgccgagccacgcgccggcgtggatccgc
cgcggcagccagttccactccgacggcgagtcccagtacccggtcatcgagaacgccgcc
ggcatggtgtggctgggccagcaggccgcgctggagctgcacgtcccgcagtgggcgttc
gtgcccgacggtgccgaccccgaccgcccggaggtccccggaccgccgaaccgcctcgtg
ctcgacctcgatcccggccccgacgtcaccctcgacgactgcgccgcgctcgccctgcgc
atccgcgagctgctcgccgcgatggacatggagggctaccccgtgaccagcggctccaag
gggctgcacgtctacgcgcccctgcccggcggcatctcggcgaacggcgcgcgcacggtc
gcgcacgccatcgcctcgcagctggaggccgaatcgcccgagctggtcaccgcgtcgatg
gcgaaggtccagcggggcggccgcgtcttcgtcgactggtcgcagaacagcgcgtccaag
accaccgtcgcgccgtactcgctgcgcggacgggatcatccgtgggtcgccgcgccgcgc
acctgggacgagctcgcccgccccggcctgcgccagctcgagttcggcgaggtcctcgcg
cgcgccctggccgacggcgacctcctcgccgggctcgacggtgccgacgcccggccggac
ggcgccgaggcaccgtcggcgccgccgcccgagcccgtcgacctcggcgagtaccgcgcc
aagcgcgacgcgcggaagacgcccgagcccttcggcggcgcaccgtcgcagggcgatccg
atcttcgtcatccaggagcaccacgcgcggcgcctgcactacgacttccgcctggagcac
gacggggtgctcgcctcctgggccgtgccgaagaacctccccgacgaccccgacatcaac
cacctcgccgtccgcaccgaggaccacccgatggactacgcggccttcgagggcagcatc
ccccggggcgagtacggcggcggcgacgtgaccatctgggaccacggcacctacgagctg
gagaagtggcgctcgaacgaggtgatcgtgacgctgcacgggaatcggctgcagggcaag
cggtacgcgctgatccggaccggcgacaagaactggctcgcgcacctcaccaaggacaag
tccgcgcccgccaagcccgccgccggcctcgcgccggatcccatgctgcccacggaatcc
gcgatcgacgggctctccgccgcggactgggccttcgagggcaagtgggacggctaccgc
atgatcacgacggtgcgcggcggcaccgtctccctgcgcacccgctcgggccgcacggtg
accggcgagttccccgagttcgagtccctcgccgccgatctcgacgggatgaacgtggtg
ctcgacggcgaggcggtggtgctcgacccgaacggcgtaccgtcgttccacctgatggcg
ggcggcgagacccggtccggcgcggtgcagttgtacctcttcgacgtgctgtcgctcaac
ggcgtcgacctgacgaagcgcccgtggacggtgcgccgccaggtgctggaaggccttgcg
ccgctgctcgaacacgacacggcggtgagcgtgccgccgctcgtcgacgcggcgaccgga
gcggaggccgcggcgctcagcgcggagctcggctgggagggggtcatcgcgaagcgccgg
gactcgccgtacctgccggggcagcgggtgcgcgcatggctcaagcacaagaactggcgc
gacctgcaggtcgcgatcggcggctggaagcccggcaagggctcgcgcgggggcgggatc
ggctcggtgctcgtgggcctgcccgccgagacggggctcgtctacctggggtcggtgggc
tccgggttcagcgaccgcgacctggccgcgctggccgaagagctggagccgctgcggatg
cgccgctccccgttcacggggccgatcgacgatcccgaggcccgtgacgccgtgtgggtg
ctccccaaggtgatcggcgacgtgcgctactcgtcgctgcgccggggcggccacctgcgg
caaccgagctggcgcggcttccggcgcgacctgctccccggtgacctgccctccgccgat
gaggcgccgtgggagggccccggagaatag
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