KEGG   Tsukamurella tyrosinosolvens: ASU32_01705Help
Entry
ASU32_01705       CDS       T05267                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tsm  Tsukamurella tyrosinosolvens
Pathway
tsm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tsm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ASU32_01705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tsm03400]
    ASU32_01705
Enzymes [BR:tsm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ASU32_01705
DNA repair and recombination proteins [BR:tsm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ASU32_01705
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AUN42767
LinkDB All DBs
Position
complement(350735..353104)
Genome map
AA seq 789 aa AA seqDB search
MRENREVDGVGVQLTNLDKVLYPATGTTKAEVIDYFQAIAPFALPHLRDRPLTRKRWPNG
VDKTAFFEKRLPSHAPAWIRRGSQFHSDGESQYPVIENAAGMVWLGQQAALELHVPQWAF
VPDGADPDRPEVPGPPNRLVLDLDPGPDVTLDDCAALALRIRELLAAMDMEGYPVTSGSK
GLHVYAPLPGGISANGARTVAHAIASQLEAESPELVTASMAKVQRGGRVFVDWSQNSASK
TTVAPYSLRGRDHPWVAAPRTWDELARPGLRQLEFGEVLARALADGDLLAGLDGADARPD
GAEAPSAPPPEPVDLGEYRAKRDARKTPEPFGGAPSQGDPIFVIQEHHARRLHYDFRLEH
DGVLASWAVPKNLPDDPDINHLAVRTEDHPMDYAAFEGSIPRGEYGGGDVTIWDHGTYEL
EKWRSNEVIVTLHGNRLQGKRYALIRTGDKNWLAHLTKDKSAPAKPAAGLAPDPMLPTES
AIDGLSAADWAFEGKWDGYRMITTVRGGTVSLRTRSGRTVTGEFPEFESLAADLDGMNVV
LDGEAVVLDPNGVPSFHLMAGGETRSGAVQLYLFDVLSLNGVDLTKRPWTVRRQVLEGLA
PLLEHDTAVSVPPLVDAATGAEAAALSAELGWEGVIAKRRDSPYLPGQRVRAWLKHKNWR
DLQVAIGGWKPGKGSRGGGIGSVLVGLPAETGLVYLGSVGSGFSDRDLAALAEELEPLRM
RRSPFTGPIDDPEARDAVWVLPKVIGDVRYSSLRRGGHLRQPSWRGFRRDLLPGDLPSAD
EAPWEGPGE
NT seq 2370 nt NT seq  +upstreamnt  +downstreamnt
atccgggagaaccgcgaggtcgacggcgtcggcgtgcagctgaccaacctcgacaaggtg
ctctaccccgccacgggcaccacgaaggccgaggtcatcgactacttccaggccatcgcc
ccgttcgccctcccccacctgcgcgaccggcccctcacccgcaagcgctggcccaacggc
gtggacaagaccgccttcttcgagaagcggctgccgagccacgcgccggcgtggatccgc
cgcggcagccagttccactccgacggcgagtcccagtacccggtcatcgagaacgccgcc
ggcatggtgtggctgggccagcaggccgcgctggagctgcacgtcccgcagtgggcgttc
gtgcccgacggtgccgaccccgaccgcccggaggtccccggaccgccgaaccgcctcgtg
ctcgacctcgatcccggccccgacgtcaccctcgacgactgcgccgcgctcgccctgcgc
atccgcgagctgctcgccgcgatggacatggagggctaccccgtgaccagcggctccaag
gggctgcacgtctacgcgcccctgcccggcggcatctcggcgaacggcgcgcgcacggtc
gcgcacgccatcgcctcgcagctggaggccgaatcgcccgagctggtcaccgcgtcgatg
gcgaaggtccagcggggcggccgcgtcttcgtcgactggtcgcagaacagcgcgtccaag
accaccgtcgcgccgtactcgctgcgcggacgggatcatccgtgggtcgccgcgccgcgc
acctgggacgagctcgcccgccccggcctgcgccagctcgagttcggcgaggtcctcgcg
cgcgccctggccgacggcgacctcctcgccgggctcgacggtgccgacgcccggccggac
ggcgccgaggcaccgtcggcgccgccgcccgagcccgtcgacctcggcgagtaccgcgcc
aagcgcgacgcgcggaagacgcccgagcccttcggcggcgcaccgtcgcagggcgatccg
atcttcgtcatccaggagcaccacgcgcggcgcctgcactacgacttccgcctggagcac
gacggggtgctcgcctcctgggccgtgccgaagaacctccccgacgaccccgacatcaac
cacctcgccgtccgcaccgaggaccacccgatggactacgcggccttcgagggcagcatc
ccccggggcgagtacggcggcggcgacgtgaccatctgggaccacggcacctacgagctg
gagaagtggcgctcgaacgaggtgatcgtgacgctgcacgggaatcggctgcagggcaag
cggtacgcgctgatccggaccggcgacaagaactggctcgcgcacctcaccaaggacaag
tccgcgcccgccaagcccgccgccggcctcgcgccggatcccatgctgcccacggaatcc
gcgatcgacgggctctccgccgcggactgggccttcgagggcaagtgggacggctaccgc
atgatcacgacggtgcgcggcggcaccgtctccctgcgcacccgctcgggccgcacggtg
accggcgagttccccgagttcgagtccctcgccgccgatctcgacgggatgaacgtggtg
ctcgacggcgaggcggtggtgctcgacccgaacggcgtaccgtcgttccacctgatggcg
ggcggcgagacccggtccggcgcggtgcagttgtacctcttcgacgtgctgtcgctcaac
ggcgtcgacctgacgaagcgcccgtggacggtgcgccgccaggtgctggaaggccttgcg
ccgctgctcgaacacgacacggcggtgagcgtgccgccgctcgtcgacgcggcgaccgga
gcggaggccgcggcgctcagcgcggagctcggctgggagggggtcatcgcgaagcgccgg
gactcgccgtacctgccggggcagcgggtgcgcgcatggctcaagcacaagaactggcgc
gacctgcaggtcgcgatcggcggctggaagcccggcaagggctcgcgcgggggcgggatc
ggctcggtgctcgtgggcctgcccgccgagacggggctcgtctacctggggtcggtgggc
tccgggttcagcgaccgcgacctggccgcgctggccgaagagctggagccgctgcggatg
cgccgctccccgttcacggggccgatcgacgatcccgaggcccgtgacgccgtgtgggtg
ctccccaaggtgatcggcgacgtgcgctactcgtcgctgcgccggggcggccacctgcgg
caaccgagctggcgcggcttccggcgcgacctgctccccggtgacctgccctccgccgat
gaggcgccgtgggagggccccggagaatag

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