Trichinella spiralis: Tsp_00470
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Entry
Tsp_00470 CDS
T01609
Name
(RefSeq) hypothetical protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tsp
Trichinella spiralis
Pathway
tsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Tsp_00470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsp03021
]
Tsp_00470
03036 Chromosome and associated proteins [BR:
tsp03036
]
Tsp_00470
Transcription machinery [BR:
tsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
Tsp_00470
Chromosome and associated proteins [BR:
tsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Tsp_00470
PBAF complex
Tsp_00470
GBAF(ncBAF) complex
Tsp_00470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF4577
Motif
Other DBs
NCBI-GeneID:
10901627
NCBI-ProteinID:
XP_003376150
LinkDB
All DBs
Position
Unknown
AA seq
947 aa
AA seq
DB search
MNIVKKSDGTPNYRYFESPDTLNAMEEVKTWLLKHHKKAKWLHDFEPGGGLCQILAAVYK
FKVEQNWRKFDFQSPNKMERNTEMFFAVEKALQQSGLLKVPQVYIQSDLDKVLVARVRDI
VKRHQAVVVDNESEATHIVFDLPDSEEKNELVRPVMRREMGVMVHWLYTPDSYDAWFHNI
AFDQELELAPPQPAQWKVDASTGKRRQNDTEDATLEFEDPAAEPSVQEVHSTKSSFAAFE
IYIQHFFVHLVAKSKDSEFNPPRSSTVLDLDTLGSDSCLESLEPPAPSLLMQKEKKSGIK
AEDDLMETNREQMNSEFSMKAANQMNEEYRNRVDMFSEKYKSKYTNERRWTDQEMLLLLE
AIEMFPDDWNRVSEHVGTRTPEECVTRFLFLPIEDPYLESEDEKALGNGSPLAYQPFPFS
KSGNPVMSAVAFLASVVDPRVASAAAKAALEQFGKDRDEIPPALLLAHTKNLEAVYAETG
KLESEIGLAYSGIAGTGEEDEDLLKKESYNENDNNQDSENKDQETSSVMENGSSALQEEQ
SEAVSHDDINTVNLMPSEDSDGISENKKRIQAAAAAALGAAAAKAKHLASVEERRIKALI
AALVETQMKKQEVKLRHFEELETLMDREHDTLEQQRQSLLQERQQFYLDQLRSVEIRARH
QAQAELIRDGLLPHTFQLNFDQVPLARPIEPPLQQVDSENKDQIVTKDPVVSPKLERATT
DGESSTAGQSEVHQEEPVTSNVMQACSYMQQPQTQPPIAAQTYPPPPTPQQPQQIVPGMF
PPQQQQSSGYPGAQAMPGQQQYSAGPGPQYNYGPQPTAGPQLGPPPQQQTFGQYPPGAQQ
PVGYPPQGYGAPNPPRQQFIPQQYPPPPPQQQQALQMSAGGYGPRGPPAQQHYVQQQVFA
QRGSPYQTQASVSYGQYTAAGPMNMAAVNPANSGFPGNQSPQVIRKF
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagtgaaaaaatcggatggaactccaaactaccggtattttgaatcgcctgac
acacttaacgctatggaggaagtaaaaacgtggctgttgaaacatcacaaaaaagcaaaa
tggttgcacgattttgagcctggtggaggcttgtgtcagattcttgctgcagtatataaa
ttcaaggttgaacaaaattggcgtaaatttgattttcaatcgccgaacaagatggaacgg
aacacggagatgtttttcgccgtggagaaagcgttgcagcagagcggtctgttgaaagtg
ccccaagtgtacatccagtcggatttggacaaagtgctggtagcccgtgtgcgggatatt
gtcaagcggcaccaggcggttgtggtggacaacgagtccgaggcgacgcacatcgtgttc
gacctgccggacagtgaggagaagaacgaactcgtccggccggtgatgcgtcgcgaaatg
ggcgtcatggtccactggctctacacgccggacagttacgacgcctggttccacaatatt
gccttcgaccaagagttggaacttgccccgccgcagccggcccagtggaaagtggacgct
agcactggaaagcgaaggcaaaacgacactgaagacgcgactttggaatttgaagatcct
gctgcagaaccatctgttcaagaagtccattctacgaaaagtagttttgctgcgtttgaa
atatatatccaacatttttttgttcatcttgtagcaaaatccaaggattcagaattcaat
ccaccacgtagcagtactgtcctggatctggatacgctgggctctgacagttgtttggaa
agtttggagcctccagctccaagcttgctgatgcaaaaagaaaagaagagtggaattaag
gctgaagacgatttgatggaaacaaacagagaacagatgaattctgaattttctatgaaa
gcagctaatcaaatgaacgaagagtaccgaaatcgagttgacatgttttcagaaaagtat
aagtctaaatatacaaatgaacgtcgatggactgatcaagaaatgttgctgcttttggaa
gctattgagatgtttccagatgattggaatcgcgtatcagagcatgtgggcactcgcact
ccggaagaatgtgtaacacgatttcttttcttgcctattgaagatccgtatcttgagtct
gaagatgaaaaagctctgggtaatggcagtccgttggcttatcagccgtttccgttttcg
aaatctggaaatccagtcatgtccgccgtggcatttctcgcatcagttgtggacccacgg
gttgcgtcggctgccgccaaagcagcactggagcaatttggtaaggatagagatgaaatt
ccgcctgctctattgttggcacatacgaaaaatttggaagctgtctatgcagaaactgga
aaattggagtctgaaattgggcttgcttattccggaattgccggcactggtgaagaagac
gaagatttattgaagaaagagtcgtacaatgaaaatgataataaccaagattctgaaaac
aaggatcaagaaacgtcatctgttatggaaaatggctcatctgctttgcaggaagaacag
tctgaagcagtttcccatgacgatatcaacactgtaaacttgatgcccagcgaagattcg
gatggtatcagcgaaaataagaaacgaatccaagctgcggcggccgcggctcttggcgct
gctgcggctaaggctaaacatttggcaagcgtggaagaacgtcgcattaaagcactgatt
gcagcgctggtggaaactcaaatgaaaaagcaggaagtgaagctcaggcactttgaagag
ctggagacattgatggatcgtgaacatgatacattggaacagcagagacagtcgcttttg
caagagaggcagcagttttatttggaccagcttcgaagtgtggaaattagagccaggcat
caggcgcaagcggaattgattcgcgacggtttgcttcctcacacgtttcagctgaatttt
gatcaggtgcctttggcgcgtcccattgaaccaccgttgcaacaagtcgacagtgaaaac
aaagatcaaattgtaacgaaagatcccgttgtcagtccaaaattggagagagctacgacg
gacggagagagttcaactgctggtcagagtgaagtgcatcaagaagagcctgtcacatcg
aacgttatgcaagcatgcagttacatgcagcaaccgcagacgcaacctccaattgctgcc
cagacttatccacctccgccgacaccacaacagccgcagcaaattgtgcctgggatgttt
ccaccgcagcagcaacaaagcagtggctaccctggtgcacaggccatgcctggtcaacag
caatactctgccggccctggaccgcagtacaattacggtccacagccgactgctgggcct
caacttggaccgccacctcaacagcaaacctttggtcagtacccgcctggcgctcagcag
cctgtagggtatcctcctcaaggatacggcgctccgaacccaccacgccagcaatttatt
ccccaacagtatccaccaccgccgccgcagcaacaacaagctttgcaaatgagcgcgggc
ggatacggtcctcgtggtccgcctgcccagcagcactacgttcaacagcaagtgtttgca
caacgaggctctccttatcaaactcaggcatctgtttcatacggtcagtatactgctgcg
ggtccaatgaacatggcggcagtgaatcccgcaaattctggctttcctggaaatcagtca
cctcaagtaataagaaaattttaa
DBGET
integrated database retrieval system