KEGG   Trichinella spiralis: Tsp_00470
Entry
Tsp_00470         CDS       T01609                                 
Name
(RefSeq) hypothetical protein
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tsp  Trichinella spiralis
Pathway
tsp03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Tsp_00470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsp03021]
    Tsp_00470
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_00470
Transcription machinery [BR:tsp03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     Tsp_00470
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    Tsp_00470
   PBAF complex
    Tsp_00470
   GBAF(ncBAF) complex
    Tsp_00470
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_1 SWIRM-assoc_3 Myb_DNA-binding Myb_DNA-bind_6 DUF4577
Other DBs
NCBI-GeneID: 10901627
NCBI-ProteinID: XP_003376150
LinkDB
Position
Unknown
AA seq 947 aa
MNIVKKSDGTPNYRYFESPDTLNAMEEVKTWLLKHHKKAKWLHDFEPGGGLCQILAAVYK
FKVEQNWRKFDFQSPNKMERNTEMFFAVEKALQQSGLLKVPQVYIQSDLDKVLVARVRDI
VKRHQAVVVDNESEATHIVFDLPDSEEKNELVRPVMRREMGVMVHWLYTPDSYDAWFHNI
AFDQELELAPPQPAQWKVDASTGKRRQNDTEDATLEFEDPAAEPSVQEVHSTKSSFAAFE
IYIQHFFVHLVAKSKDSEFNPPRSSTVLDLDTLGSDSCLESLEPPAPSLLMQKEKKSGIK
AEDDLMETNREQMNSEFSMKAANQMNEEYRNRVDMFSEKYKSKYTNERRWTDQEMLLLLE
AIEMFPDDWNRVSEHVGTRTPEECVTRFLFLPIEDPYLESEDEKALGNGSPLAYQPFPFS
KSGNPVMSAVAFLASVVDPRVASAAAKAALEQFGKDRDEIPPALLLAHTKNLEAVYAETG
KLESEIGLAYSGIAGTGEEDEDLLKKESYNENDNNQDSENKDQETSSVMENGSSALQEEQ
SEAVSHDDINTVNLMPSEDSDGISENKKRIQAAAAAALGAAAAKAKHLASVEERRIKALI
AALVETQMKKQEVKLRHFEELETLMDREHDTLEQQRQSLLQERQQFYLDQLRSVEIRARH
QAQAELIRDGLLPHTFQLNFDQVPLARPIEPPLQQVDSENKDQIVTKDPVVSPKLERATT
DGESSTAGQSEVHQEEPVTSNVMQACSYMQQPQTQPPIAAQTYPPPPTPQQPQQIVPGMF
PPQQQQSSGYPGAQAMPGQQQYSAGPGPQYNYGPQPTAGPQLGPPPQQQTFGQYPPGAQQ
PVGYPPQGYGAPNPPRQQFIPQQYPPPPPQQQQALQMSAGGYGPRGPPAQQHYVQQQVFA
QRGSPYQTQASVSYGQYTAAGPMNMAAVNPANSGFPGNQSPQVIRKF
NT seq 2844 nt   +upstreamnt  +downstreamnt
atgaatatagtgaaaaaatcggatggaactccaaactaccggtattttgaatcgcctgac
acacttaacgctatggaggaagtaaaaacgtggctgttgaaacatcacaaaaaagcaaaa
tggttgcacgattttgagcctggtggaggcttgtgtcagattcttgctgcagtatataaa
ttcaaggttgaacaaaattggcgtaaatttgattttcaatcgccgaacaagatggaacgg
aacacggagatgtttttcgccgtggagaaagcgttgcagcagagcggtctgttgaaagtg
ccccaagtgtacatccagtcggatttggacaaagtgctggtagcccgtgtgcgggatatt
gtcaagcggcaccaggcggttgtggtggacaacgagtccgaggcgacgcacatcgtgttc
gacctgccggacagtgaggagaagaacgaactcgtccggccggtgatgcgtcgcgaaatg
ggcgtcatggtccactggctctacacgccggacagttacgacgcctggttccacaatatt
gccttcgaccaagagttggaacttgccccgccgcagccggcccagtggaaagtggacgct
agcactggaaagcgaaggcaaaacgacactgaagacgcgactttggaatttgaagatcct
gctgcagaaccatctgttcaagaagtccattctacgaaaagtagttttgctgcgtttgaa
atatatatccaacatttttttgttcatcttgtagcaaaatccaaggattcagaattcaat
ccaccacgtagcagtactgtcctggatctggatacgctgggctctgacagttgtttggaa
agtttggagcctccagctccaagcttgctgatgcaaaaagaaaagaagagtggaattaag
gctgaagacgatttgatggaaacaaacagagaacagatgaattctgaattttctatgaaa
gcagctaatcaaatgaacgaagagtaccgaaatcgagttgacatgttttcagaaaagtat
aagtctaaatatacaaatgaacgtcgatggactgatcaagaaatgttgctgcttttggaa
gctattgagatgtttccagatgattggaatcgcgtatcagagcatgtgggcactcgcact
ccggaagaatgtgtaacacgatttcttttcttgcctattgaagatccgtatcttgagtct
gaagatgaaaaagctctgggtaatggcagtccgttggcttatcagccgtttccgttttcg
aaatctggaaatccagtcatgtccgccgtggcatttctcgcatcagttgtggacccacgg
gttgcgtcggctgccgccaaagcagcactggagcaatttggtaaggatagagatgaaatt
ccgcctgctctattgttggcacatacgaaaaatttggaagctgtctatgcagaaactgga
aaattggagtctgaaattgggcttgcttattccggaattgccggcactggtgaagaagac
gaagatttattgaagaaagagtcgtacaatgaaaatgataataaccaagattctgaaaac
aaggatcaagaaacgtcatctgttatggaaaatggctcatctgctttgcaggaagaacag
tctgaagcagtttcccatgacgatatcaacactgtaaacttgatgcccagcgaagattcg
gatggtatcagcgaaaataagaaacgaatccaagctgcggcggccgcggctcttggcgct
gctgcggctaaggctaaacatttggcaagcgtggaagaacgtcgcattaaagcactgatt
gcagcgctggtggaaactcaaatgaaaaagcaggaagtgaagctcaggcactttgaagag
ctggagacattgatggatcgtgaacatgatacattggaacagcagagacagtcgcttttg
caagagaggcagcagttttatttggaccagcttcgaagtgtggaaattagagccaggcat
caggcgcaagcggaattgattcgcgacggtttgcttcctcacacgtttcagctgaatttt
gatcaggtgcctttggcgcgtcccattgaaccaccgttgcaacaagtcgacagtgaaaac
aaagatcaaattgtaacgaaagatcccgttgtcagtccaaaattggagagagctacgacg
gacggagagagttcaactgctggtcagagtgaagtgcatcaagaagagcctgtcacatcg
aacgttatgcaagcatgcagttacatgcagcaaccgcagacgcaacctccaattgctgcc
cagacttatccacctccgccgacaccacaacagccgcagcaaattgtgcctgggatgttt
ccaccgcagcagcaacaaagcagtggctaccctggtgcacaggccatgcctggtcaacag
caatactctgccggccctggaccgcagtacaattacggtccacagccgactgctgggcct
caacttggaccgccacctcaacagcaaacctttggtcagtacccgcctggcgctcagcag
cctgtagggtatcctcctcaaggatacggcgctccgaacccaccacgccagcaatttatt
ccccaacagtatccaccaccgccgccgcagcaacaacaagctttgcaaatgagcgcgggc
ggatacggtcctcgtggtccgcctgcccagcagcactacgttcaacagcaagtgtttgca
caacgaggctctccttatcaaactcaggcatctgtttcatacggtcagtatactgctgcg
ggtccaatgaacatggcggcagtgaatcccgcaaattctggctttcctggaaatcagtca
cctcaagtaataagaaaattttaa

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