Trichinella spiralis: Tsp_01930
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Entry
Tsp_01930 CDS
T01609
Name
(RefSeq) intermediate filament protein ifa-1
KO
K18585
intermediate filament protein if
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tsp04812
]
Tsp_01930
Cytoskeleton proteins [BR:
tsp04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type V: Nuclear lamins
Tsp_01930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
LTD
CC149
TPR_MLP1_2
ATG16
Fez1
Myosin_tail_1
She9_MDM33
CCDC138_cc
HALZ
SOGA
Prominin
CCDC144C
APOBEC4
DUF4201
CCDC93_CC
bZIP_2
KASH_CCD
Prefoldin_2
Motif
Other DBs
NCBI-GeneID:
10907151
NCBI-ProteinID:
XP_003377744
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MPELKTTTKIEKQNITTTSSSSSNTNLQSGGGGVRTTTTTGNKVEEHTDSNFSTLSGKMD
SGEYRSTISARPGFARNSPGTPTIGGTPTGVGAGGRVLKIVTEMGSSSVSGFSPGFHQAG
AASAILESREREKKEMQDLNDRLASYIEKVRFLEAQNRKLANDLEGLRGRWGKDTSSVKQ
MYEGELAEARKLIDDTAKNKATLESQINRLQTDLAEFRRKYEDALRQRAGDQEKIDGLLT
QLSEHEAEANLLRRRIEGLEDEVNRMKKENMRLQSELNKARTDLDQETLNRIDYQNQVQT
LLEEIDFIRRVHDQEIKELQALAARDTTAENREFFKNELALAIRDIRNEYDSVSLQNKSD
MESWYKLKVQEIQTASARHTMETGYQKEEVKRLRSQMGDLRGKLGDLESRNSLLEKQVQE
LTYQLEDDQRQYESALNDRDGQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEG
EENRTGLRQLVEQVVKTRSLQQQEDTESMRVVKGEMATRTSYQRSAKGNVSISECNPDGK
FIVLENTHRAKDEPLDEWKLKRKIDGKREVVFTFPPKFVLKAGKNVKVWARNQGGVNDPP
NQLIFEGEDNWGVGQNVQTILYNKDGEEKATHIQRSSQQTTSTA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctgaagacgacaaccaaaattgaaaagcagaatattactactactagtagt
agtagtagtaatactaatttgcaaagcggcggcggcggcgtacggacgaccacgaccacc
ggcaacaaagttgaagagcatacagatagcaatttttccacactgtccggcaaaatggac
agcggagagtaccggtcgactattagcgccagacccggcttcgcgcgcaattctccgggc
acgccgaccatcggcggcacaccgaccggcgtcggcgccggcggtcgggttttgaaaatt
gtcaccgaaatgggcagcagcagtgtttcgggcttcagtcccggcttccaccaggccggc
gccgcgtcggcgattctcgaatccagagaacgggaaaagaaggaaatgcaagatttgaac
gatcgtctggccagctatattgaaaaggtgcgatttttggaagcccagaatcgaaaattg
gcgaacgatttggaaggcttgcgcggccgttggggcaaagacacctcgtcggtcaagcag
atgtacgaaggggaactggccgaagctaggaaactgatcgacgatactgccaagaacaaa
gccacactggaaagtcaaatcaatcgtctacaaaccgacttggctgaattccgtcgcaaa
tatgaagatgctttacgtcaacgtgctggagatcaggaaaaaattgacggtctgttgaca
cagttgagcgagcacgaagctgaagcgaatttgcttcgtcgtcgaattgaaggtttggaa
gatgaagtgaatcgaatgaaaaaggaaaatatgcgcttgcagagtgaattgaacaaagct
cgaacggatttggatcaagagacgctcaatcgtattgattatcaaaatcaggtgcaaact
ttgttggaagaaattgacttcattcgtcgtgtgcatgatcaagaaatcaaagaattacaa
gctttggccgctcgtgatacaactgccgaaaatcgtgaatttttcaaaaacgaacttgca
ctagccattcgtgatattcgcaacgaatacgattcagtttctctacaaaacaaaagtgat
atggaatcttggtataagttgaaggttcaagagattcagacagcatcagctagacataca
atggagactggataccagaaagaggaagtgaaacgtcttcgttcacagatgggcgatttg
cgtggcaaattgggtgatttggaaagtcgaaattcattgctggagaaacaagttcaagaa
ttaacataccaactggaggatgatcaacgtcagtatgaatcggcattgaatgatcgcgac
ggacaaataagaaaaatgcgcgaagaatgccaggctcttatggtcgaattgcagatgttg
cttgacaccaagcagactttggatgcggaaattgccatctacaggaagatgcttgaaggt
gaagaaaatcgaacaggtctgcgtcaactcgtcgagcaagttgtcaaaactcgaagctta
caacaacaagaagatactgaaagtatgcgtgtagtgaaaggagaaatggcgacaagaacc
agctatcagcgatcagcgaaaggtaatgttagcatcagtgaatgcaacccggatgggaag
ttcatcgttttggaaaatacacaccgtgcaaaggatgaaccgttggatgaatggaaattg
aaaaggaaaattgacggaaaacgtgaagttgttttcacttttccgccaaaatttgtcctg
aaagctggaaagaatgtgaaagtttgggcacgtaatcaaggtggagtaaatgatccacca
aatcagctaattttcgaaggtgaagacaactggggcgttgggcaaaatgtgcagaccatc
ttgtacaataaagatggagaggagaaagcgacacacattcaacgatcaagtcaacaaact
accagcactgcttag
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