Trichinella spiralis: Tsp_04378
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Entry
Tsp_04378 CDS
T01609
Name
(RefSeq) bromodomain and WD repeat-containing protein 3
KO
K11798
bromodomain and WD repeat domain containing protein 1/3
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsp04121
]
Tsp_04378
Ubiquitin system [BR:
tsp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
Tsp_04378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Bromodomain
His_Phos_1
NBCH_WD40
ANAPC4_WD40
Nup160
DUF5987
LisH
Motif
Other DBs
NCBI-GeneID:
10905451
NCBI-ProteinID:
XP_003375191
LinkDB
All DBs
Position
Unknown
AA seq
1544 aa
AA seq
DB search
MSVLKIFFCLWEKCFYYNNAKCSINIVMQARVIVVRHLNEEGREQAVSLGRHFTAVGTTL
SLVYSSDLLRAVETAELIISCQKFAKDLQIVSDPRLRERVKEEEAMNNNREVCFEEHLLY
LIYRFLSMKEGLGDAADALGRSLETAGYIPLRFDYQGVERRQTLAQFHSIYASRIRDDHL
PVLLENFIAQTQRFAPAGLTGPLSLLDTGPFSMLRADSSSTLQRKWRRRDVAGLRSCMLM
PVASNLKNCFNLADMFFASQVSSANLMQQLSFRMLFPKFHLQAAVIGHLASVCCVTFDRT
GRRLFTGGDDHLIKVWSPRSARLLYTFRGFCGQITDMHVNYENTLIAAASMDKFIRVWSL
KNAQPVAAMTGHTGMITNLQFLPSTTTDRQVLVSTGNDGNVFFWHYMHDAFEASPVRFNV
RSKVGGRVIGLSVSGGGRFVGTCGSDHSITVFKVPSDGEPEMTFDIAGHNDRIDCIQWAH
TGLRFATCSKDGLAKIWKYQYTSWNPMVLDPSLNRGAGETTRRLSMLLCTWNADDTLLVT
SSSDNRIRVWDSTSGQLVRSFDDHTNDVQNLIAHPSDPDLMVTAGDDGQVIFWNMAEGVR
VNSYLNKRTVSNHEVECSVYEGCFSPDGFHFAAVDSLGSTLFFGLHHEYPPVPGEQFFHT
DYRPLLADEAEYVVDEQTQLPPHLMPPPFLVNAEGEPYPPAEQRFVPGKEHCSEQYLVPE
LPLVSEEAVASAGPSRFGFHLQADANRQLFCCWTSRHLVPALDADQLTTLHGRIVETARQ
EEELFLKESSRHLPTPRAESPSVTADSAPRVVETATSERDSRRFRVDDIDLLADESTDDD
DYDPDYTEGGNGGSGAGTSAAGVGSSGGSGGAVAGDAANTRSLRTRSSARRRRGRRTQAN
LGRPSLTNGSLDDSTARSSAGEFIYFDDDNDEDYYQEGFETTRSTTGCRRCRFDRSVVAA
ERRGTLRGSADQVPLFRLDHVDHLPTISVFSSTRRRSGLLPPGSPDVRGRSEAGEFVQVE
RERFALEQRFAFGRDRVRGGQRGDVPLAPSAQLSVAVDSDQPAFVGRAVVVHFLRLLPRH
PERDRLHRAQAALRQFDQTSVAQWRLVQSVDRRPLVSIVVRWENDDEDRLSPWDLVPLEV
GNNGTGDGEMFDVTEAASIWPYTPKTNEWPSRGRDAECQRLLVGLETISSQPFAEPFLEP
VDLGVYPWYCMCIEYPCDLATIKARLANRFYRRVAAVKFDVERINQNACTFNEPNSTIVH
QARLLTNVLLAYISRPNCFEIDQLYQEFMDQTADGAAADSTSTLNNGFFINDQPGPSGLS
QQQTGSNWIERCQTLLQNIFRANDESQSVKLGRRLTLSLLGIQRRLTLGHFASPGALERE
MDAAMGSFSTRSSTRQSISFVDSLYAKFKRDFEPNYGRFDGQPFAKLMEASRARNVKPEH
FDGEGVEPLPLFDARVREWFESMCEVTLVNYDKYVNYLFVNYHLNLNSVLVTFLCEFSIS
TRSRFAVFASSFGVLFIVLLETSISELVMMIQHFADHPTISSTV
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtactgaaaatttttttttgtttatgggaaaaatgtttttattacaataatgca
aagtgcagcattaatattgtaatgcaagcaagagtgatagttgtgagacatcttaacgaa
gaaggacgcgagcaagcagtttccttgggtcgtcatttcactgctgttggaactacactg
tctttggtgtatagcagtgatctgctgcgagctgttgaaacggcagaattgataatatct
tgtcaaaaatttgccaaagatttgcaaattgtctcagacccacgactccgtgaacgagta
aaagaagaggaggcaatgaataataacagggaagtgtgctttgaagagcacttgttgtat
ttgatttatcgtttcttgtcaatgaaagagggtcttggtgatgcggccgatgctttgggc
cggagtttggaaaccgccggctacatcccgttgcgtttcgattaccagggtgtcgaacgg
cgccaaactttggctcagttccattccatttacgccagtcgaattcgcgacgaccacttg
ccagtgttgttggaaaatttcatcgctcaaacgcaacgcttcgcaccggccggtctgact
gggccgctttcactgctggacactggtccgttttcaatgctgcgagcagattcgtcgtca
acattgcagagaaaatggcgccgccgggacgtggccggtctgcgcagttgtatgctgatg
ccggtcgccagcaatttgaagaactgtttcaatttggccgacatgtttttcgcttctcaa
gtgtcgagcgcgaatctgatgcagcagttgtcgttccggatgctgtttccgaaattccac
ctccaagcggccgtgattggtcacttggcgtcggtatgctgcgtcacgttcgaccgtacc
ggtcgacgcttgttcaccggtggcgatgaccatttgatcaaagtctggtcgcccagatcg
gcccgactgttgtacacgttccgcggcttctgcggccaaatcaccgacatgcacgtcaat
tacgagaacacgttgatcgccgccgccagcatggacaaatttatccgcgtctggagcttg
aaaaacgcgcagccggtggccgccatgaccggccacaccggcatgatcaccaacttgcaa
tttttgccgtcgacgacaaccgaccgtcaagttctggtgtcgaccggcaacgacggcaac
gtcttcttctggcattacatgcacgacgctttcgaagcttcgccggtgcgcttcaacgtg
cgttccaaagtcggcggccgcgtcattggtctgtcggtgagcggcggcggtcggttcgtc
ggtacctgcggttccgaccattcgatcactgtattcaaagtcccttcggacggcgagccg
gaaatgacgttcgacattgccggtcacaacgaccgcatcgactgcatccaatgggcgcac
actggcctgcgcttcgccacttgcagcaaagatggtctggcgaaaatatggaaatatcag
tacacgtcgtggaatccgatggtgctcgacccgagtctcaaccgcggagccggcgaaacc
acgcgtcgcttgagcatgctgctgtgcacttggaacgccgacgacacactgctggtcact
tcgtccagcgacaatcgaatccgcgtctgggattcgaccagcggtcagttggttcgctcg
ttcgacgaccacaccaacgacgtgcagaatttgatcgctcacccgtcggacccggacttg
atggtcacggccggcgacgacggccaggtgatcttctggaatatggccgagggggttcgc
gtgaacagctatttgaacaagcgaacggtctccaaccacgaggtcgaatgttcagtgtac
gagggctgcttttcgccggacggcttccacttcgccgccgtcgactcgttgggttcgacg
ttgttcttcggtcttcaccacgaataccccccagtgcccggcgaacagttcttccacacc
gactaccgaccgttgttggccgacgaagctgaatacgtggtcgacgagcagacccaactg
ccgccccacttgatgccaccgccgtttctggtcaacgccgaaggcgagccttatccgccg
gccgagcagcggttcgtgcccggcaaagagcattgttcggaacaatatttggtgcccgaa
ttgccactcgtgagcgaagaggcggtcgcttcggccggacccagtcgtttcggcttccac
ctccaagccgacgctaaccgacaactgttctgctgttggaccagccggcatctggtgccg
gcgctcgacgccgaccaactgaccacactgcacgggcgcattgtggaaactgcccgccag
gaggaggagctgtttttgaaagaaagcagccgccatttgccgacgccgcgcgccgaatcg
ccgtcggtgaccgccgactctgccccgcgggtagtcgagacggcgacatcggagcgcgat
tcgagacgcttccgcgtcgacgacatcgacctgctggccgacgagtctaccgacgacgac
gactacgatcccgactacaccgaagggggcaacggcggctcaggtgccggaacctcggcc
gcgggcgtcggctcttcgggcggcagtggtggcgctgtcgccggcgacgccgccaatacc
cggtcgctgaggacgaggagcagcgcgcgcaggcggcgcggccgacgaacccaagccaac
ctcggccggccgtcgctgaccaacggctcgctggacgattcgacggctcgttccagcgct
ggtgaatttatctactttgacgacgataacgacgaagattattaccaagagggattcgag
acgacgcggtcgacgaccggctgccgacggtgtcgcttcgaccgaagcgtcgtcgcggcc
gagcggcgtggcacgctacgaggatctgctgaccaagttccacttttccgattggatcac
gtcgaccacttgccgaccatctccgtattttcctcaacaaggcgacgaagtggtctactt
ccaccagggtcaccggatgtacgtggacgaagtgaagcgggcgaatttgtacaagttgaa
agagaaagatttgccttggaacagcggtttgcgtttggaagagaccgagttcgcggtggt
caaagaggtgacgttccacttgcaccaagtgcgcagttgtcggttgcagttgactcggat
caacccgcgttcgtcggcagagcagtcgtcgttcactttttacgtctgcttccacgacat
cccgagcgtgatcgacttcatcgtgctcaggcagctttacgacagttcgatcagacgtcg
gtggcgcaatggcgactcgttcaaagcgttgatcgacgaccgctggtgtcgatcgtggtt
cggtgggaaaacgacgacgaagatcgcctcagtccgtgggatttggtgccgctcgaagtg
ggcaacaacggcaccggcgacggcgaaatgttcgatgtgaccgaagcggcgtcgatttgg
ccctacactccgaaaacgaacgaatggccgagccgtggtcgcgatgccgaatgccagcgt
ctgttggtcggcttggagacgatcagcagccagccgtttgccgaaccgtttctggagccg
gtcgacttgggcgtctatccttggtattgcatgtgcatcgaatatccgtgcgatttggcg
acgatcaaagcccgtctggccaatcggttctaccgtcgcgtggcggccgtgaaattcgac
gtcgaacggatcaaccagaacgcctgcacgttcaacgagccgaacagcaccatcgtccac
caggccagactgttgaccaacgtactgttggcttacatttcccggccgaactgtttcgaa
attgaccaactctaccaagaattcatggaccagacggctgatggggcggccgccgattcg
acgtcgacgttgaataacggttttttcatcaacgaccagccgggtcccagtggattgtcc
caacagcagactggttcgaattggatcgaacgatgccagactttgttgcagaatattttc
cgagccaacgacgaatcccagtcggtgaaactgggccgtcgtttgacgttgtctttgctc
ggcatccagcgccgactcaccctgggccatttcgccagtcctggagcgttggaacgggag
atggacgctgcgatggggtcgttttcgaccagaagttcgaccagacagtcgatctcgttc
gtcgactcgttgtacgccaaattcaagcgggactttgagccgaattacggcaggtttgat
ggacaaccgttcgccaagctgatggaagctagccgtgctcgcaacgtcaagccggaacac
tttgacggcgaaggagttgaacctttgccactgttcgatgcccgtgttcgagaatggttc
gaatcgatgtgcgaagtgacattggtcaattatgacaaatatgtcaattatttatttgtc
aactatcatttgaacctgaattctgtattggttactttcctgtgcgaattttccattagt
acacgatcgcggtttgcagtgtttgcgtcttcatttggtgtcttgttcattgttttattg
gaaacttcaatttcagaattggtgatgatgattcaacattttgcagatcatccgacaatt
agtagtacagtgtaa
DBGET
integrated database retrieval system
