Thamnophis sirtalis (common garter snake): 106546485
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Entry
106546485 CDS
T06107
Name
(RefSeq) collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106546485
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106546485
09142 Cell motility
04820 Cytoskeleton in muscle cells
106546485
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106546485
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106546485
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106546485
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106546485
Hyaluronan
Extracellular matrix or blood plasma proteins
106546485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
DUF1194
TehB
Motif
Other DBs
NCBI-GeneID:
106546485
NCBI-ProteinID:
XP_013918837
UniProt:
A0A6I9XXE0
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
MNNWSYILMVSILTTWCCTDAQTTVCREASVADIVFMVDGSWSIGPKNFRIIQDFLYTLV
NSFDIGKDKIQVGMIQYSDNPRNEFLLNFFHQKKDILKKIQNLNYKGGGTKTGKSLKFML
DEQFSEMAGSRHSEGIPQIAVVITDGQSQDNFSGPAEEVKNAGIILYAIGIKDAILSELQ
EIASDPDEMHVYDVEDFAGLQGISQNILQVLCTTVEEASQDFIHISPVCRKVTVADVVFM
VDSSSSIGLENFQKVKSFLYTLISSLFVGHDRVRIGLIQYSDEIFPEFHLKQYSLKNDIL
EHIKKLTLQKGSTYTGAALDFIKDEYFTDSAGSRMQENIPQVLILLTDGESHDEVKVPAH
KLKNEGILIYVVGIGIHNTSELMNIANQPFNKFLFNIDNFDILQDLTNSLLETMCLALES
QIKAFTKRYADIVFLLDSSKSMGSANFEKVKRIISQIVEQLDIGPKKYQIGLAQYSEGGK
VEFLLNRYKMKKDILNHIQQSTIFMGGPLRTGSALQFLREVYFVDKAGSRLRQGTPQFTV
IFSSAKSEDDVKKPAKDLKEMGVNIATIGILHSDKKEMKVIATSPLVYQVDDIEDLDQVQ
TTIIDIVEASVQQEYESALNANVPAVCSTASWADIVFLVDESTRIGQKNFQLIRTFLLKI
INALEIASDNVRVALVLYSDKPRLEFSLNTFEDKSEVMNYLKRLPYRGGETYMGAAIDFL
KKKVFTKRAGSRKNHGVQQLAVVITDGQSLDDFTVPASKLRRAGVTLYVVGIQNISASSQ
LYKIASHPPRKHVTTMEYFLQLSNMEYVIKKQLCSEIVSQMFAIPVRSRALKEGCKETEE
ADIYFLIDGSGSIQTEEFLDMKNFMKEVISMFQIGPNQIRFGVVQYASDPQKEFLINEYN
TLAQLKDAIKVIWQIGGGTKTGDALRYMKNLFKTSARDNVPQFLIVITDGKSQDQVTIPA
EELRSAGIIIYSIGVKDAVKKELKDIAGTKDRMFFVNDFDSLKLIKHDIARDICSLEACK
NLKVDIILLIDTSESMDQFEFEQIKDFADLIVNKSDIGADKVQIGLLQFGFNPEEVFPLN
KYNNKADMRKAITTMRQVQEGARIGRALDFASSYFDTSEGGRLNVKQYLIVVTDEKSSDD
VRRAARALRKKGVVIYAIGILKANNSELLDIAGTQDKVFSEDYFESLMFLVKPILFQICN
PEKICKQIEVADIIFVVHGSRDVTDLQFKGIQRLMEAIVNNSVVGKDNAQFGAVIFGTLP
EQKFQLNTYSTKSQLREAIKKLVPLRGLTYTTRALNFARELFGIAYGGRISHLGITKIIV
LITDEPTASTDRPNLSAAVQALKQEGIQVIAVGIEDASRTELAEIVGEKGRWFFTSSYNA
LDSLYENITYLICDESKTGN
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaataattggagctacattcttatggtttccattttaactacttggtgttgcacagat
gctcaaactactgtctgcagagaagcttctgtcgctgatattgtgttcatggtggatgga
tcatggagtataggaccaaaaaacttcagaatcatacaagactttctctacacattggtt
aacagttttgacattggaaaagacaaaattcaagttgggatgattcagtatagtgataat
cctcgcaatgagttcttgttgaattttttccatcagaaaaaggacattttaaagaaaata
caaaatctaaactacaaaggtgggggcaccaaaactggaaaaagtttgaagtttatgcta
gatgagcagttcagtgaaatggctggaagtcgacacagtgaaggcattccccaaattgca
gtagtgataacagatggacaaagtcaagacaacttttctgggccagcagaagaagttaag
aatgcaggcatcatactttatgccataggcatcaaagatgctattctgtctgagcttcag
gaaattgctagtgatccagatgaaatgcatgtttatgatgtggaggattttgctggcttg
caaggtatctctcagaacatactccaagtgttatgtactactgttgaggaagcctctcaa
gactttatacatatttctccagtatgccgaaaagtcactgttgccgacgttgtgtttatg
gtagacagttcgtcaagcattggtctggagaattttcagaaggtgaaaagtttcctctac
accctgatttccagtctttttgttggtcatgaccgggtcagaattggactgatccagtat
agtgatgagatttttcccgaatttcatctaaagcaatattctttgaaaaatgatattcta
gaacatataaaaaaattgaccttacagaaaggaagcacttacacaggtgctgctttggat
tttatcaaggatgaatacttcactgattctgctgggagcagaatgcaagaaaatatcccc
caagtactgatcctactcacagatggggaatcacatgatgaagttaaagttccagcccac
aaattaaaaaatgaaggaattttaatttatgtagtggggattggcatccataacacctct
gagcttatgaatattgcaaaccaaccttttaataagtttctgtttaatattgataatttt
gatattcttcaagatcttaccaacagccttcttgaaacaatgtgtttggctttggagagc
cagattaaagcattcacaaagcgctatgctgatattgttttccttttggattcctctaaa
agcatgggatctgccaattttgaaaaagtaaaaagaattatttcccagattgtagaacaa
ttagacattggccctaaaaaataccagattggacttgcacagtacagcgaaggagggaaa
gtggaatttttgctgaatagatataaaatgaagaaagatattcttaaccacattcagcag
agcactattttcatgggaggccctctgaggactggtagtgctctccaatttttgcgagaa
gtctattttgttgacaaagccggaagccgtcttcgtcaaggaacaccacagtttacagtg
attttttcctctgctaaatctgaagatgatgtcaagaaacctgcaaaagatctgaaagaa
atgggagtgaacattgcaacaattggcatcttacattctgataagaaagaaatgaaagtg
attgctacctcccctttagtttaccaggttgatgacatagaggatcttgatcaggttcag
acaaccatcatagatattgtggaagcatcagtccagcaagagtatgagtctgcattaaat
gcaaatgtgccagcagtttgctccactgcctcatgggcagacattgtgtttcttgtggat
gaatcaactcgcattggtcaaaagaattttcaactgatcaggactttcctactcaaaata
atcaatgctctggaaattgcctcagataatgtacgagttgccttggtactttacagtgat
aaaccaagattagagtttagcttgaatacatttgaagacaaatcagaggttatgaattat
ctaaaaagattgccttatcgtgggggggaaacatatatgggtgctgctatagacttccta
aagaaaaaagttttcaccaagagagcaggaagcaggaaaaatcatggagtgcagcagttg
gctgtagtgatcacagatggtcagtctctagatgatttcactgttcctgcatctaagctt
cgccgggcaggtgttacactttatgtcgtgggtatccaaaacatttctgcgagcagccaa
ctgtacaaaattgcttctcatcccccaaggaaacatgttacaaccatggaatatttcttg
caactatcaaacatggaatatgttataaaaaaacaactttgtagtgaaatagtttcacaa
atgtttgcaattccagtgcggtctcgtgccctgaaggaaggctgtaaagagacagaggaa
gcagatatttatttcttgattgatggttctggcagtatccagacagaagagttccttgac
atgaaaaactttatgaaagaagtgattagcatgttccagattggtcccaatcaaattcgt
tttggggtggttcagtatgcaagtgatccccaaaaagagtttctgattaatgagtacaat
acattggcccaattaaaagatgcaataaaagtgatctggcagattggtggtggcactaaa
actggagatgctttacgttatatgaagaatttgtttaaaacttcagcgagggacaatgtc
ccccagtttctcattgttattacagatggtaaatcccaggatcaagtaaccatacctgca
gaagagctgcggagtgcagggattattatatattccataggtgtcaaagatgcggtaaaa
aaagaactaaaagatatagcagggaccaaggacaggatgttttttgtgaatgattttgat
tccctgaagcttatcaaacatgatattgcacgggatatttgttctcttgaagcctgtaaa
aatttgaaagtggacataattttactaattgatacatcagaaagtatggatcaatttgaa
tttgaacagattaaggattttgctgatttaattgtaaacaagtcagatattggggctgat
aaggttcagattggcctgctccaatttggcttcaatccagaagaggttttcccactgaac
aagtacaacaacaaggctgacatgaggaaagcaataactacaatgaggcaggttcaagaa
ggagccagaattggaagagctctagattttgcatcctcttactttgacacatctgaggga
gggcgtttgaatgtaaaacaatatttgatagtggtgacagatgagaaatctagtgatgat
gtgagaagagcagccagagcactcaggaagaaaggtgttgtcatctatgccattggaata
ctgaaagcaaacaactctgagcttttagacattgctggcactcaggataaagtattttca
gaggattattttgaatccctcatgttcctggtgaagccaattctatttcagatttgcaac
cctgagaagatatgcaagcaaattgaagttgctgacataatcttcgtagttcatggatct
agagatgttacagatctgcaattcaaggggattcaacggcttatggaagcaattgtgaat
aactcagttgtgggcaaagacaatgctcagtttggagctgttatctttggtactctaccg
gaacaaaaatttcaactaaatacctattccacaaaatctcaactcagggaagccattaaa
aaactagttcctttaagaggattaacctatacgacaagagctttgaattttgcaagggaa
ctctttggaattgcttatggtggacggatatcacacttaggtatcacaaagatcatcgtt
ttgatcacagatgaaccaacagcatccacagatagacctaatctctcagcagcagttcag
gctttgaagcaagaaggcattcaggtcattgctgttgggatagaggatgctagtagaaca
gaactagcagaaatagttggtgagaagggaagatggttttttacttccagttacaatgca
ttggacagtttatatgaaaacataacttatcttatatgtgatgaatcaaaaacaggtaac
tag
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