Trachemys scripta elegans (red-eared slider): 117879819
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Entry
117879819 CDS
T07347
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117879819 (COL13A1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117879819 (COL13A1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117879819
NCBI-ProteinID:
XP_034631090
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Position
7:83562555..83727615
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AA seq
837 aa
AA seq
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MLEEKGWKGASNSAFDRGCIAPPRTGDGERCCRFPLLLGSGLPGVSLISLVLSLLLYFRT
SDLQSRVSHLEADRCTQLPAWLSADQMETAILGRVDQLLDEKLKFNLPRHREVRDTHQKC
NCPAGPPVSTKVPVRLRSVHLMGPTGRPGLPGDKGAMGIPGRPGLKGQPGEKGTPGEAGM
SIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQKGEMGVAGPKGQTGPPGQKGEKGQC
GDYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPTGPSGPAGNPGQ
PGPVGPPGKVGEPGKAGKDGKGLPGSPGPKGDPGIQGYHGRKGEVGEAGLPGAPGLPGSI
GPKGEKGDTGMKGERGMPGLPGKHGAKGAPGMAVAGMKGEPGVAGMMGPPGLPGKRGQRG
EKGRAGDPGLPGFLGQKGEKGDAGNALGGGKGEPGHPGLPGPPGPKGEAGDIGQTGIAGP
QGEKGEPGAPGEQGPVGPRGPKGEPGKDEMVDYDGNINEALQEIRTLALMGPPGLPGVAG
PPGLPGQKGEIGLPGPPGHDGEKGPRGKSGEVGPPGPQGPPGKEGPPGVKGETGLTGTPG
AKGEKGEAGEAGSPGLDGPTGEKGEQGDQGIPGPSGLPGLIGLPGLTGEKGEPGEDGEKG
DPGDSVSGPPGPQGPPGVAGLQGLPGPKGEAGIDGMKGEKGVQGEKGDRGPLGLPGTPGP
IGAPGPAGPKGERGSKGDPGNAGPMGLAGLPGLQGPSGDKGNRGERGKKGSRGPKGDKGD
QGAPGLDAPCPLGEDGLPVQGCWNKVPKGTALYRSEGHFPCQIGRIKEYLKCYGFYY
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagggctggaaaggtgctagcaatagtgcctttgacagggggtgcatt
gctccccccaggacaggggatggagaaagatgctgcaggtttcctctactgctgggctct
gggcttcctggggtgtctttgatttctctggtgctgagcctcctgctatactttaggaca
tcagacctgcaatccagggtttcacatttggaagcagacagatgcactcagctccctgcc
tggctctctgcagaccaaatggagacagctattttgggaagagttgaccaactgcttgat
gagaaattaaagttcaacttgccgagacatcgagaagttcgtgatacccaccagaagtgt
aactgcccggcagggcctcctgtaagtaccaaagttccagtgcgtttgcgaagtgtgcac
ctgatgggccctacaggaagaccagggcttccgggagacaaaggcgccatgggaatccct
ggaagaccgggactaaaggggcaacccggagagaagggaacccccggagaagcaggcatg
tccatcatcggtccccgaggccctcccggacagcctggaacgagaggttttcctggattt
ccgggcccgattggtttggatggcaaaccaggccatcctggacagaagggggagatgggt
gttgctggtcccaagggacagacgggacctccaggacaaaaaggagaaaagggccagtgt
ggagactacccacacaggctgttgcctctcctcaattcagtgcggctggctccacccccg
gtcataaagagacgcactttccagggtgaacaaggacaggcggggattcaaggtccgcca
gggccacctggtccaccagggccaactggaccatctggaccagcaggaaatccaggacaa
cctggcccagttgggccacctggcaaagtaggggagcctggaaaggcaggcaaggatgga
aagggtttacctggatcccctggaccaaagggagaccctggaattcaaggataccatggg
aggaagggtgaggtgggtgaggctggcctaccaggtgcacctggccttcctggatctatt
ggccccaagggtgaaaagggggatactggcatgaagggggagaggggcatgccagggctg
ccaggaaaacatggagctaagggggctcctggaatggctgttgcagggatgaagggagaa
cctggagttgcagggatgatgggccccccaggtttgccagggaaaaggggacagaggggg
gagaagggaagagctggtgatcccggacttcctggattcctaggacagaagggagagaag
ggagatgctggcaatgcactcgggggaggtaaaggggaacccggacacccgggactacct
gggcctccaggaccaaagggggaagctggtgacattggccagactggcattgcaggaccg
cagggggaaaagggagaacctggagcacccggagaacaggggcctgttggtccaaggggt
cccaaaggggagccaggaaaggatgaaatggtggattatgatggtaacatcaacgaagct
ctacaggaaatacgaaccttggccctgatgggacctcctggacttccaggagtagctggg
cccccagggctaccaggccagaagggtgaaattggattaccgggtcctcctggacacgat
ggcgagaaggggccacgaggtaaatcaggagaggtgggtcctcctggtccccaagggccc
ccaggaaaggagggacctccaggagtgaagggagagactggacttaccgggaccccagga
gcaaagggggaaaagggggaggcaggagaagctggctctccgggtcttgatggcccaact
ggggagaaaggagaacaaggtgaccaagggataccaggaccttcaggattaccgggtcta
attggacttccaggattgacaggagagaaaggagaacctggtgaggatggggaaaaagga
gatccaggagactcagtatcggggccacccgggccccaaggcccaccaggtgttgcaggt
cttcaaggccttccaggaccgaagggggaagcagggattgatggaatgaaaggagagaag
ggtgtccagggtgagaaaggagaccgaggtccactgggattgcccggtactccaggacca
attggagctccaggaccagcaggaccaaaaggggaaaggggcagtaaaggtgaccctgga
aatgcaggaccaatggggctagctgggcttcctggtttacaaggcccatctggtgacaaa
ggaaaccggggggagaggggcaagaaaggctctagagggcctaaaggggataagggagac
caaggagcgcctggattagatgcaccctgtccattgggggaagatggcttgccagttcag
ggctgctggaataaggtgccaaaaggaactgccctatatagatctgaaggtcatttccct
tgccaaatcgggagaattaaagaatatttgaagtgttatggattttattattaa
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