KEGG   Trachemys scripta elegans (red-eared slider): 117879979
Entry
117879979         CDS       T07347                                 
Symbol
CDH23
Name
(RefSeq) cadherin-23 isoform X1
  KO
K06813  cadherin 23
Organism
tst  Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:tst00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:tst03037]
    117879979 (CDH23)
   04515 Cell adhesion molecules [BR:tst04515]
    117879979 (CDH23)
Cilium and associated proteins [BR:tst03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   117879979 (CDH23)
Cell adhesion molecules [BR:tst04515]
 Cadherins
  Major cadherins
   117879979 (CDH23)
SSDB
Motif
Pfam: Cadherin Cadherin_3 DUF3540 DUF6377
Other DBs
NCBI-GeneID: 117879979
NCBI-ProteinID: XP_034631477
LinkDB
Position
7:complement(84028053..84572560)
AA seq 3368 aa
MLRDFLITGTMKCHFAASNFLLSLLILELVCLGLSNRLPYFINYFFDTYLLINEDTPVGS
SVTQLLARDLDNDHLVFGVVGEEASRFFAVESVTGVVWLRQPLDRETKSEFTVEFSVSDS
QGVIKGTVNIQVGDVNDNAPRFHNQPYSVRIAENTPVGTPIFIVNATDPDQGAGGSVLYS
FQPPSSFFAIDSGRGIVSVIRGLDYEITQAYQLQVNATDQDKSKPLSTLANLAITITDVQ
DMDPVFINLPYSTNIYENSPPGTTVRMITAIDQDKGRPRGIGYTIVSGNTNSIFALDYIS
GALTLNGPLDRENPFYSTGFILTVKGTELNDDRTPSNATVITTFNVLVIDINDNAPEFNS
SEYSVGIPELAQVGFALPLFIQVQDKDEGLNSVFEVYLVGNNSSHFIISPTSIQGKADIR
VRVAVPLDFETIPRYEFSLFANESMPDHVGFARVKINLINENDNRPIFSQVLYNVSLFEN
VTVGITVLRVHATDNDVGTYGKVSYFFSDDPDRFSLDKDTGVITLIARLDFETTQRYTLT
VIAKDGGGEETTGRVRINVLDVNDNVPTFQKESYLGALRENEPSVTQVVRLRAADEDSSP
NNQITYSIVQASAFRSSFDISVSEGYGVISVTRPLDYEQVSNGVIYLTVMAKDAGVPSLN
SSVPITVEVFDENDNPPTFSRPSYVITVMEDIMAGATVLFLNATDLDRSREYGQESIIYS
LEGSSHFRINARSGEITTTSLLDREAKSEYILIVRAVDGGVGHNQKTGIATVNITLLDIN
DNYPMWKDDPYFINLVEMTPPDSDVTTVVAIDPDLAENGSLVYSIRPPNKFYSLNSTTGK
IRTTGVVLDRENPNPQEAELMRKIMVSVTDRGRPPLRATGSATVFVNLLDLNDNDPTFQN
LPFIAEVPEGLPAGSSVFQVVAIDLDEGLNGQVTYRMQVGMPRMDFLINSSSGLVNSTAV
LDRERISEYYLRVVASDAGVPSKSSTSTLTVRVLDVNDENPTFFPAVHNISLPENVHRDF
KVVRLNCTDADVGLNAELSYFITGGNQDGKFSVGFRDGVVRTVVNLDRETMASYTLVLEA
IDNGPTGNRRTGTATVHITVLDVNDNRPIFLQSSYEASVPENIPDSSSIVQVKATDADEG
VNGRVWYRIVRGNNYNHFRINPSSGLVMRGLRHLDREHNSSHVLEVEAYNSEQGSMRSSV
RVIVYVEDVNDEVPVFTQRQYNRLGLRETAGIGTSVAVVRATDRDTGNGGLVNYKILTGS
EGKFEIDESTGLITTIDYLDYETKTSYLMNVSATDQAPPNNQGFCSVYVSLLNELDEAVQ
FSNLTYEAVITENIPTGSEVLRVLARSIDNLNQITYKFDPNTNAQALSLFKINGITGVIT
VKGQVDREKGDFYTLTVVADDGGPKVDSTVKVTITVLDENDNSPQFDITSDSAVSVAEDS
AIGRRIAVVLARDPDAGSNGQVTFSLTSGNIGNIFEIRTSNNTYGEVFVRRPLDRELLDH
YTLKIQASDSGVPPRRKEHTLRVNILDVNDNPPIIGNPFGYNVSVNENVGGGTAVAQVRA
TDRDAGLNSVLSYYITQGNEDLIFRMDRVTGEIATRPSPPDREQQRFYRLVVTVEDEGNP
SLSATTTVCVTILDENDNAPVFQQQQYEVTLDEGPATLNATLITIKALDCDEGPNGTVAY
AIAEGNIVGTFHINSTTGQICTVKELDYEISHGRYTLVVTATDQCPIPSRRLTTTTTVLV
NLNDINDNQPTFPRAYEGPFDITEGQPGPRVWTFLAHDGDSGPSGQVEYSIIEGDPLGEF
VISPVEGELRVRKDAELDRENIAFYNLTIAAKDRGIPPLSSTVMVGVCVLDINDNDPELL
NLPMNLTLSENTPISSFVTRILAHDADSGRNGLLTFNITAGNAENVFYINGTTGIVYVSR
PLDREQVAEYRLTVTVKDNPENTRNARRDFDLLVISIADENDNRPLFTQSSYEAEVMENS
PAGTPITVLNGPVLALDNDQGINALVRYQLLGMPTDLFIVNNRTGVILVKPGRVIDREAF
LNPRLELTLVAEDVGKLNSTARLTVTILDDNDNRPSFNPAVVTVQLQENSPPGFSVLQVM
ATDADSGLNQQLSYRIEGGAQDKFLINANSGIIRVANITIDREERDTYRLTVMAVDRGMP
PLSGTATVNILVDDVNDYRPEFINPIQTVSVLESAVPGTIIAEVTAIDRDLNPRLEYYII
EILAKDDTNALVLGQQGAFAVDFKTGAVKVKSSLNRELVATYEVTISVHDNASDVIDRSV
SVPNAKLTVNVLDVNDNTPRFRPFGATYFTERIVEGATPGTTLISLSAVDPDKGANGQIT
YELLNLSPEGYARLEDLSAGKVIANSTVDYEEVQWLNFTVRASDNGSPRRSAEIPVYLQI
VDINDNNPIFSQTSYQKPVFEDVPLGTVILRVRATDADSGRFALIQYNLGDGEGKFGINP
NTGDIYVLSALDREKKDHYTLTAVARDNPGDISSNRRENSVQVLITVLDINDFRPQFAKR
QFSTSMYENEPAGTSVITMTATDLDEGDNGVVTYSIEGPGVEAFKIDKNSGLITSRRHLQ
SYERFNLTVVATDKGRPPLWGTTMLQVEVIDINDNRPVFVRPPNGTILHIKEEIPLRSNV
YEVYATDKDEGLNGAVQYNLLKTGAGNKDWEYFSIDSSSGLIQTARRLDREKQAVYSLII
VACDQGQPAYETMQPLQVALDDIDDNEPIFLRPPRGRPQYQALSVPEHSRPGTIVGNVTG
AVDADEGSNAIVYYFIAAGNKENNFKLSQEGKLQVLRDLDRETEPYYSIIVKASSNRNWT
PPRGHRAARIQALDPSTDTTLQEVRIFLDDINDQPPRFSKSEYTAGVATDAKVGSELIRV
VALDSDVGNNSLVLYNILGIRYIKQHSNDSEEAASIFSIGNLDGILRTFDLFTAYNPGYF
VVDIMASDLAGHNDTAVVGIYILRDDQRVKIIINEIPDKVRQFEEEFIRLLSNITGAIVN
TDDVQFHVDKKGRVNSAQTELLIHVVNRETNRILDVERVIQMIDENKEQLRNLFRNYNVL
DVQPAITARAPDDLSALQMAIIILAILLFLAAMLFILMNWYYRTVHKRKLKAIVAGSTGN
RGFMDIMDMPNTNKYSFDGANPVWLDPFCRNMELAAQAEHEDDLPENLSEITDLWNSPAR
THGTFGREPSAAKPDDDRYLRAAIQEYDNIAKLGQIMREGPIKGSLLKVVLDDYMRLKKL
LAQRMVHKATTSQGDQSSVTELIQNDLDEEEEQSPSQGSLRFRHKQPVELKGPDGIHVVH
GSTGTLLTSDINSLPEDDQKVLGRSLETLNSDCGGYNDRNARTESAKSTPMHKMREVIME
SPLEITEL
NT seq 10107 nt   +upstreamnt  +downstreamnt
atgttaagagatttccttattacaggaaccatgaagtgtcactttgctgccagcaacttt
ctgctctccctcttgatcttggagctagtctgtttgggtctgagcaatcggctgccgtac
ttcatcaactatttctttgacacgtacctgctgatcaatgaggatacccccgtgggctca
tcagtgacccagttgcttgcccgggacctagacaacgaccatcttgtgtttggtgtggtc
ggggaggaggccagcaggttctttgcagtggaaagcgtgactggagttgtatggctcagg
cagcccttggacagagagactaagtcagaattcacagttgaattttctgtcagtgacagc
cagggggtgatcaaggggacagtgaatatccaagtgggagatgtgaatgacaatgctcca
aggtttcacaatcagccctacagtgttcgcattgcagagaacacaccagtgggaactcca
attttcatagtgaatgccacagacccagaccagggggcaggaggcagtgtgctttactcc
tttcagcctccatccagcttctttgccattgacagtggccgcggcattgtgtcggtaata
cgagggctggattatgaaatcactcaggcctaccagctccaggtcaatgcaacggaccaa
gataaaagcaagcccctgtccactttggctaatctggcaatcaccatcacagatgtgcaa
gacatggatccagtcttcatcaacctgccttacagcacaaacatctatgagaactcacct
ccgggtacaactgtgcgtatgataacggcaattgaccaggacaaaggacggcccaggggt
attggatacaccattgtctcaggtaacaccaacagcatctttgcactggactacatcagt
ggagctttaaccctgaatgggccactggaccgtgaaaaccctttctacagcactggattc
attctcacagtgaagggtacggagctgaatgatgaccgcaccccctccaatgctacggtg
atcaccaccttcaatgtccttgtcatcgacataaatgacaatgcccccgagttcaatagt
tccgagtacagtgttggcatccccgagctggcccaggtgggctttgcccttcctcttttc
atccaggtgcaggataaagatgagggactcaacagtgtttttgaggtctacctggtggga
aacaactccagtcacttcatcatctccccaacctcgatccagggaaaggcagacatccgc
gttcgagttgcagtgccactggactttgagacaattcctcgctatgaattttctctgttc
gcaaacgagagcatgccagaccacgttggctttgctcgtgtgaagattaacctcatcaat
gagaatgacaaccgccccattttcagccaagtcctgtacaacgtcagcctgtttgagaat
gtcacagtgggaatcactgtcttgagggtccatgcaactgacaatgatgtgggcacttat
gggaaagtcagctattttttcagtgatgatcctgacaggttctccctggataaagacaca
ggcgtgatcacactgattgcccggttagactttgaaacgacacagcgctacacactgact
gtgattgccaaggacgggggtggggaagagactacagggcgagtgaggattaacgttctg
gatgtcaacgataatgtccccaccttccagaaagaatcctatttgggggctctccgggaa
aatgagccttcggtcactcaggtggtccgtctcagggcagctgatgaagattcctctccg
aataaccagatcacttacagcatcgtgcaagcttcagccttccgaagttcgtttgacatt
agtgtctctgaagggtatggagtgataagtgtgactcgtcctctggattatgagcaagtc
tccaatggagttatttatctgactgtgatggccaaggatgctggtgtcccatcacttaac
agcagtgttcccatcaccgtagaggtgtttgatgaaaatgataatccacccacattcagt
cggccatcctacgtcattactgtcatggaggacatcatggcaggagccacagtgctattt
ttaaatgccactgatttggatcggtccagagaatatggtcaagagtcaattatctactcc
ctggaaggttcctctcacttccggatcaacgctcgttcaggtgaaatcaccacaacctct
ttgctggaccgggaggccaaatcagagtacatactcattgtccgggccgtggatggtggt
gtgggtcacaaccagaaaacaggaattgccactgtgaacatcactttgctggacattaac
gataactatcccatgtggaaggatgatccgtacttcattaacctggtggaaatgaccccc
ccagactccgatgtcacaacggtggttgctattgaccctgacctggctgagaatggctcc
cttgtgtacagcatcaggccaccgaataaattctacagcctcaacagcaccacggggaag
atccggaccacgggggtcgttttggatagagagaacccaaacccccaagaagctgaacta
atgaggaagatcatggtctccgtcactgaccgtgggagaccgcctttacgggctactggt
agcgccacagtttttgtgaatttgctggacctcaatgacaatgatcccaccttccagaac
ctgcctttcattgctgaggtccctgaaggccttccagcaggctcctccgtcttccaggtg
gtggccatagacctggatgagggtctgaatgggcaggtgacctaccgcatgcaagtgggc
atgccccgaatggacttcctcatcaacagcagcagtgggctcgtcaactccacagcagtg
ctggacagggagaggatctccgagtattacctcagggtggtagcaagtgatgcgggagta
ccgtccaagagctccaccagcaccctgacagtcagagttctggatgtgaatgacgaaaac
cccaccttcttcccagctgtccacaacatctccctacctgagaacgtacaccgggacttc
aaagtggtccgtctgaactgcactgacgctgatgtgggtctgaatgctgaactcagttac
ttcatcactggtggaaatcaggatggtaagttcagtgttggcttcagagatggtgtggtc
agaacagtagtgaatctcgacagagaaactatggcatcatataccctagtcctggaggcc
atagacaatggccccacagggaacaggcggactgggacagccaccgtgcacatcactgta
ctagatgtcaatgacaatcggcctatcttccttcagagcagttacgaggccagtgtacct
gagaacatcccagactccagcagcatagtgcaggtgaaagccacagatgcggatgaaggt
gttaatgggagagtgtggtacaggattgtcaggggaaacaattataaccactttcggatc
aaccccagcagtgggctggtcatgaggggcttacggcacctggacagagagcacaattcc
tcccatgtcctggaggtggaagcctacaacagtgaacaaggatcaatgaggagctctgtt
agggtgatagtgtatgtggaagatgtaaacgatgaggtgcctgtgtttacccaacggcag
tataaccgtctggggctgcgagagactgcagggattggaacttctgtcgcagttgtccgg
gcaacagatcgagacacagggaatggaggcctggtgaattataaaatcctgactggctct
gaggggaagtttgaaattgatgagagcactggcctcatcaccaccatcgactacctggac
tatgagacaaaaaccagttacctgatgaatgtctctgccacagaccaggcaccccccaac
aaccaaggtttctgcagcgtctatgtcagcctgttgaatgaactggatgaggctgtgcag
ttctcaaacctcacctatgaggcagtgattacagagaacatccccacaggctcggaggtg
ttgcgcgtcctggcacgctccattgacaacctgaaccagatcacctacaagtttgatccc
aacaccaatgctcaggcactgtccctgttcaagatcaatggaatcactggtgtcatcaca
gtcaaaggccaggtggatcgagagaagggggatttctacactttaacagtagtggcagat
gatgggggaccaaaggttgactctactgtgaaggtaacaatcaccgttctggatgagaat
gacaacagcccacagtttgacatcacctctgattctgcggtgagcgtagcagaggacagt
gccattgggaggcgaattgcggtagtcttggccagagacccagatgcaggaagcaacggg
caggtgaccttttctctgacatcaggaaatataggtaacatctttgagatccgcaccagc
aacaatacctatggagaggtgtttgtgagaaggccattggatagagaactgctggatcac
tacaccttaaagatccaggcatctgacagcggagtcccgcctcggagaaaagagcacacc
ctaagagttaatatcctggatgtcaacgataacccaccaatcattgggaatccctttgga
tacaatgttagtgttaatgagaatgttggtggaggcaccgctgtggctcaggtgcgagca
accgacagggacgctgggctcaacagcgtcctttcctactacatcacccagggaaatgaa
gatctcatcttccgcatggaccgagtcactggagaaatcgccacccgcccatcccctcca
gaccgtgagcagcagaggttctaccggctggttgttaccgtggaggatgagggcaaccca
tccctttcagccactaccacagtgtgtgtcactatcctggatgagaatgataatgctcca
gtattccagcaacagcagtatgaagtcacactggatgagggcccggccaccctcaacgcc
accctcattaccatcaaggcactggattgtgatgaagggcccaatggcacagttgcatac
gccatcgcagagggaaatatcgtgggcacctttcacataaacagcaccacagggcagatc
tgcactgtgaaggagctggactatgagatcagccatggacgctacaccctggttgtcact
gccacagaccagtgtccaatcccatcacgccgtctcacaaccactacaacggtgttggtg
aacctgaatgatatcaatgacaaccagcctacttttccaagagcctatgagggacccttt
gatatcacagaaggtcagcctggcccaagggtgtggactttcctggcccatgatggggac
tccgggcctagtggacaagtggagtacagcatcatagaaggggaccctcttggagaattt
gtaatctctccggtggagggggagctgcgagttcggaaggacgccgagctagatcgagag
aacattgcattctataatctcaccattgctgccaaggatagggggatacctcctctcagc
tccacggtcatggtgggagtgtgcgttctggacattaacgataatgatcctgagctcctc
aacctgccgatgaatctcacactcagcgagaacacccccatctccagctttgtgacccgc
attcttgcccacgatgccgacagtgggcggaatggtctcctgacctttaacataacagcc
ggcaatgcagaaaacgtcttttacatcaatggcactactggcatcgtctatgtaagccgt
cccttggatagggagcaggtggctgagtacagactgactgtcacagtgaaggacaatcct
gagaacacgcgcaatgccaggcgggattttgacctgctggtgatttcaatagcagatgaa
aatgataaccggccgcttttcactcagagctcttatgaggcagaggtgatggagaactct
ccagcaggaactcccatcacagtgctcaatggtccagttctagctttggacaatgatcag
ggcatcaatgcactggtgaggtaccagctgctggggatgccaacggacctcttcattgtc
aacaacagaacaggtgtcattttggtaaaacctggcagagtgattgacagggaagctttc
ctgaacccacgccttgagctcacactggtggcagaggatgttggcaagctgaacagcact
gctaggctcactgtgaccatactggatgataatgacaacaggccatcatttaacccagcg
gtggtgacagtgcaactgcaggaaaacagccccccaggtttttctgtccttcaggtaatg
gctacagatgcagacagcggcctcaaccagcagttgagctaccggatcgagggtggagct
caggataagttcctgatcaatgccaactccggaataatccgagtggccaacatcaccata
gatagggaagaaagggacacctacagactgacagtgatggctgtggatcgaggcatgccc
cctctctctggcaccgccaccgtcaacatccttgttgatgacgtcaatgattatcggccg
gaattcatcaacccgatccagacggtcagcgtgcttgagtcagcagtgcctggcaccatc
attgctgaggtcacagcaatagacagagatctcaatccccggctagaatattacatcatt
gagattctggccaaggatgacaccaatgctctagtgctgggccagcaaggagcatttgcc
gtggattttaaaacaggagctgtgaaggttaagtcctccctaaacagggagctagtggcc
acgtatgaagtcaccatctctgtccatgataatgccagcgatgtcattgaccgttccgtc
agcgtgccaaatgctaagctgacagtgaacgtgctggacgtcaatgacaacactccccga
ttccgtccatttggggccacctatttcactgagaggatcgtggaaggagccacgccgggg
accaccctgatttccttgtctgcggtggacccagacaaaggtgccaatggacagatcacc
tatgagttgctgaacctttcacctgaagggtatgcccgacttgaagacctctcagcagga
aaggttattgcaaatagcacggtggactatgaagaggtgcaatggctgaatttcactgtc
cgggcctcagacaacggctctcctcggagatcagctgagatcccggtgtatctccagata
gtggatatcaatgacaataatcccatcttcagccagacgtcttaccagaagccagtcttt
gaggatgtcccactgggtacggtcatcctgagggtcagggccactgatgcagactccggg
cgctttgccctcatccagtacaacctgggagatggagagggcaagtttgggataaacccc
aacacgggtgatatctatgtcctgtcggccctggaccgagagaagaaggatcactacacg
ctgactgctgtagcaagggacaaccctggggacatttctagtaaccgtcgagagaactct
gtgcaggtgttgattacggttctggacatcaatgacttcaggccccagtttgccaagcga
cagttcagcaccagtatgtatgaaaatgagccagcggggacgtctgtgatcaccatgaca
gccacggacctcgatgagggtgacaatggagtggtgacctacagcatcgagggtcctgga
gtggaggccttcaagattgataaaaactccgggctcatcacatcccgaagacacctgcag
tcttatgagaggttcaacctgacagtggtggcaacagacaaaggcaggccacctctgtgg
ggaaccaccatgctccaggtggaggtcattgacattaatgataaccggccagtgtttgtc
cggccacccaatggcactatcctgcatattaaagaggaaatacctctccggtccaatgtg
tatgaagtctatgccacagataaggatgagggtctcaatggagctgtacagtacaactta
ttgaaaactggagcagggaataaagactgggagtacttcagcatcgactccagcagtgga
ctcatccagacagcaaggaggctcgaccgagaaaaacaagcagtgtacagtctgatcatc
gtggcatgtgaccagggccagcccgcgtatgagaccatgcagcctctccaggtggcactg
gatgacattgatgacaatgaacccatctttctgagaccacctagaggtagacctcagtat
caagctctgtctgttcctgaacattcccgccctggtaccattgtggggaatgtcactggt
gctgtggatgcagatgagggctccaatgctatcgtctattacttcatagcagctggtaac
aaggagaacaatttcaagttaagccaggaggggaagctgcaggtgctacgagacctggat
cgagagacagagccctattactccatcattgtcaaagcctccagtaacaggaactggaca
cctcctagaggtcacagggcagccagaatccaggccttggaccccagcacagacaccacg
ctgcaggaagtccggatctttctggatgatattaatgatcagcctccccgattctctaag
tcagaatacacggcaggggttgcgacagatgccaaggtgggttcagagctgatcagggta
gtggcactggactccgatgtggggaacaatagcctggtcttgtacaacatcctgggaatc
cgttacatcaagcagcactccaatgactcggaggaggcggccagcatcttcagtattggt
aacttggatgggatcctgcgaacctttgaccttttcacagcctacaaccctggctacttt
gtggtggacatcatggcttcagacctagcagggcataatgacactgccgttgtcggaatc
tacatcttgcgggatgaccagcgggtgaaaatcatcatcaacgagatcccagacaaggtg
cggcagtttgaggaagagttcatcagactgttgtccaacatcacaggagccattgtcaac
acggatgatgtgcagttccacgtggacaaaaagggccgtgtgaactctgcccagacagag
ttgctgatccacgtggtgaatagagaaaccaataggattctggatgtggagcgagtgatc
cagatgattgatgagaataaggagcagctgcggaatctcttcaggaattacaatgtgttg
gacgtgcagcctgccatcactgccagggccccagatgacctctcagcgctgcagatggca
attatcatcttggctattctcctcttcctggctgccatgctcttcatcctcatgaactgg
tactacagaacagtacacaaaaggaaattaaaagctatcgtggccggctcaacaggaaat
cgaggcttcatggacatcatggacatgccaaacacaaataaatattcctttgatggggct
aaccctgtgtggctagatcctttctgcaggaatatggagctagcagcgcaggcagagcat
gaagatgacctgcctgagaacctgagtgaaatcacagacctatggaacagcccagccagg
actcacggaacatttggaagagagccctctgctgccaaacccgacgatgaccgttacctg
cgagcagccatccaggaatatgacaacattgccaaactaggtcagatcatgcgggaaggg
cccatcaagggctctctcttgaaggtggtcttggacgattacatgcggctgaaaaaactg
cttgcccagaggatggtgcataaagccaccaccagtcagggggaccagtcctcggttacc
gagctgatccagaatgacctggatgaagaggaggagcaaagcccaagccaggggagcctt
cggttccggcacaagcaacctgtagagctcaaaggcccagatggtatccatgtggtgcat
ggcagcacaggcactctgctaacttctgatatcaacagcctgccggaggatgaccagaaa
gtgctgggtcgatccctggagacactgaactcagactgtggaggctataatgaccgcaat
gctcgcaccgagtctgccaaatccacccccatgcacaagatgagggaggtgattatggag
agcccactggagatcacagagttatga

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