Trachemys scripta elegans (red-eared slider): 117887358
Help
Entry
117887358 CDS
T07347
Symbol
ITGB4
Name
(RefSeq) integrin beta-4 isoform X1
KO
K06525
integrin beta 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04810
Regulation of actin cytoskeleton
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117887358 (ITGB4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117887358 (ITGB4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117887358 (ITGB4)
04810 Regulation of actin cytoskeleton
117887358 (ITGB4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117887358 (ITGB4)
04515 Cell adhesion molecules [BR:
tst04515
]
117887358 (ITGB4)
04090 CD molecules [BR:
tst04090
]
117887358 (ITGB4)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117887358 (ITGB4)
Exosomal proteins of bladder cancer cells
117887358 (ITGB4)
Cell adhesion molecules [BR:
tst04515
]
Integrins
Integrin beta subunits
117887358 (ITGB4)
CD molecules [BR:
tst04090
]
Proteins
117887358 (ITGB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Integrin_B_tail
Pur_ac_phosph_N
Calx-beta
PSI_integrin
I-EGF_1
EGF_2
SEA
Motif
Other DBs
NCBI-GeneID:
117887358
NCBI-ProteinID:
XP_034645785
LinkDB
All DBs
Position
14:complement(19987008..20043423)
Genome browser
AA seq
1799 aa
AA seq
DB search
MRRKRMDVLLQRTWAGLLLLVMVCDVCLCQKNRINRCVASRASSCTECIRVSKDCSYCTD
ETFKESRCDLRENLVSYGCSGASIVYVRGEMLVQQNFSIDTSLKKTQVSPQRMSMRLRAG
EEASFNIDVFQPLESPVDLYILMDFSYSMSDDLNNLKEMGQKLAGFLQDLTSNYTIGFGK
FVDKVSAPQTDMRPEKLREPWRDADSPFSFKNVIRLTSNIHHFSQELMKERISGNLDAPE
GGFDAILQTAVCKEKIGWRTDSTHLLVFSTESAFHYEADGTNVLSGILPRNDEQCHLNRA
GTYTYDTKQDYPSVPTLVRLLGQHNIIPIFAVTNHSYSYYEKLHKYFPISEIGLLQEDSS
NIVELIRMAFERIRSKMDIRADSVPKSMKTEFTSLKYKKTESGSFHVTRGEVGSFKVRVK
AHEYVGGEHVCNLPKKEQQGIIHVKPSSLSDSLKIDASVICDVCPCEQQKMVRAAMCSSN
GDLVCGQCVCYPGWRGDMCDCSTASSSDNQACIRPGDSEPCSGRGECLCGKCQCYSEDLT
QRYEGDFCQFDNLQCPRTSGFLCNDRGRCYMGQCACESGWGGPGCECPTSNDTCIDSKGG
ICNGRGRCECGRCICDNPSRFTDLTCEISYSLAVLGICEDIRSCVQCQAWGTGEKKGQKC
KDCSFKIQMVDELQKEKEVNEYCSFQDEEDDCTYRYTLDGDPGTLHNNTILMQKKKECPP
GSFLWLIPLLIFLMLLLGLLLLLCWKYCACCKACLALLPCCARGRTVGFKEDHYMLRQSL
MASDHLDTPMVRSGSLKGRDTVRWKINNNVHKPGFSSHTTTNPKELIPYSISLRLARLFT
QNLMKPDSRECEQLRKEVEENLNDVYKHISGVHKLQQTKFRLQPNAGKRQDHTIVDTVLT
APLSAKTEIVKVTEKHVSQEAFNELKVTPGYYTVTSDQDAHGMVEFQEGVELVDVRVPLF
IREEDDDEKQLQVEAMEVPMGTAAIGRRLVNITIIKEQASSIITFLQPAYSHSRFDQVAR
IPVRREIMENGKSQITYRTRDLTAKHGKDYVFAEGDLVFQPGEMQKEVQVELLELTEIDA
LLQNRQLKQFAVDLLNPKYGAKIGKYPQTTVTITDPEVVDGIQIPIGLGQFPQSPRGKLG
APLNPNAQALSSRKIRFNWLPPPGKPTGYQVKYWIQGDPESEARLINSTVPSAELNNLYP
YCDYEMQVCAYSNMGEGPYSDITHCRTLEDVPSEPGRLAFNVVSSTVTQLSWAEPAETNG
EITAYEVSYGLVNEDNVPFGPMKKVLVEEAKKRMVLIENLRESQPYRYTVKAKNGAGWGP
EREATINLATQPRRPMSIPIIPDIPIIDAEGGEDYDSYLMYSADVMRSPSGSKRPSVSDD
SEHLPNGRMDFTFPGSGGTLNRTLNASYNQLTSHMHQERRLMGSSSLTRDYSTMTSGYDQ
PGRILPSIREDGGRMALLPQDVGVRSRAKVKGSYASNGFRDSIIMTDGPTGIAKYIDSRM
ALGVPDTPTRLVFSALGPTSLKVSWQEPQCEKEVQGYSVQYQLLSGGDVYRLSIPNPTHN
SVVVDNLLPNHSYIFKVKAQSEEGWGPEREGVITIESQVDPQSPLSPVPGSPFTLSTPSA
PGPLVFTALSPDSLQLSWERPRKPNGAILGYMVTCEMLHGGGEPRNIYVEGDNPETSLTV
PYLSENIPYKFKVQAKTTQGFGPEREGIITIESQDGGAFSQFGGQQYMREEVYNLPAEYN
TTISHSSLEPYYTDGMLMTTQRVESSGTLTKQVTKEFVSRTMMSSGTLTKQMETQFFED
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggaagaggatggatgtgctgctccaaaggacatgggccgggctgctcctgttg
gtcatggtctgtgacgtatgcctgtgccaaaaaaacagaattaatcgctgcgtggcctcc
agagcaagcagctgcacagagtgtatccgagtaagcaaggactgctcctactgcacggac
gagaccttcaaagaatcccgatgtgacctgagagagaacctggtgagctatggctgcagc
ggggccagcattgtgtacgtgagaggagagatgctggtgcagcagaattttagcatcgac
acgtctctgaagaaaacccaggtgtccccacagcggatgtccatgcggctgagagctggg
gaggaggccagcttcaacatagacgtcttccagcccctcgagagccctgtggatctctac
atccttatggacttctcctactccatgtctgacgacttgaacaacctcaaagagatgggc
cagaagctagcgggattcctgcaagaccttacctccaattacaccatcggatttggaaag
tttgtggacaaagtctcggctccacaaacagacatgagacctgagaagctacgagagccc
tggagggacgccgactcgcccttctccttcaagaacgtcatccgcctgaccagcaacatc
catcatttcagccaggagctgatgaaagagcgcatttccggcaacctggacgccccggag
gggggctttgatgccatcctgcagacggctgtttgcaaggagaaaatcggctggcggacc
gacagcactcacctgctggtgttctccactgagtccgccttccactatgaagctgacggc
accaacgtcctgtcagggatcctgccaaggaatgatgagcagtgtcacctgaaccgagcg
ggcacctacacctacgacaccaagcaggactacccctctgtgcccaccctggtgcgcctg
ctgggccagcacaacatcatcccgatcttcgccgtcaccaaccactcctacagctattac
gagaagctgcacaagtatttccccatctcggaaatcgggttgctgcaggaagactcctcc
aatatcgtggagctgattcgcatggctttcgagcgtatccgttccaagatggacatccgg
gctgactcagtccctaagtccatgaagacagaatttacctccttgaaatataaaaagaca
gagtctgggtcgttccatgtcacccgaggggaagtgggcagcttcaaggttcgcgtgaaa
gctcatgagtacgtgggcggggagcacgtctgcaacctccccaagaaagagcagcagggg
ataatccacgtgaaaccctcctctttgagtgacagcctgaaaattgacgcctccgtcatc
tgtgatgtctgcccctgcgaacagcaaaagatggttagagcggccatgtgcagttccaac
ggggacttagtctgtgggcagtgcgtctgctacccgggatggcgaggggacatgtgtgac
tgttccacagcctcttccagtgacaaccaggcctgcatccgccctggagactcagagccc
tgctcagggcggggcgagtgcctctgtgggaaatgccagtgctattctgaggacctgacc
cagcgctacgagggtgacttctgccagtttgacaacttacagtgcccgcggacctccggc
ttcctctgcaatgatcgtggtcgctgctacatgggtcagtgtgcatgtgaaagtggctgg
gggggccctggctgtgaatgccccacaagcaatgacacctgcatcgacagcaaagggggc
atctgcaatggccgtgggagatgtgaatgcggcaggtgcatctgcgacaatccttctcgg
ttcactgacctcacctgtgaaatcagctactccctggccgtgctggggatttgcgaagac
attcgaagctgcgtccagtgtcaggcctgggggaccggggagaagaaggggcagaaatgc
aaggactgctctttcaagatccagatggtggatgaactgcaaaaagagaaggaggtgaac
gagtactgctcgttccaggacgaggaggacgactgcacgtaccgctacaccctggacgga
gatcccggcacactgcacaacaacaccatcctgatgcagaagaagaaagagtgcccacca
ggaagcttcctgtggctcatccccctgctcattttcctgatgttactcctggggttgctg
ctgctgctgtgctggaagtactgcgcttgctgcaaggcttgcctggccctgctgccctgc
tgtgcacgaggccgcactgtcgggttcaaagaggatcactacatgctgcggcagagcctc
atggcttcagaccacctggacacccccatggtgcgcagcggctccctgaagggcagggac
accgtccgctggaagatcaacaacaatgtccacaagccgggcttctcctcccacaccacc
acaaaccccaaggagctgattccttacagcatctcgctgagactggccaggcttttcacc
cagaacctcatgaaaccggacagccgggaatgtgagcagctgcgcaaggaggtggaggag
aacctgaacgatgtttacaagcacatttccggtgtccacaaactccagcagaccaagttc
aggttgcagcccaatgctgggaaaaggcaggaccacacgattgtggacacagtgctcacc
gctcccctttcggccaagacggagatcgtgaaagtgacggagaaacacgtctctcaggag
gctttcaatgagctgaaggtgactccgggttactatacagtgacttctgaccaagatgcc
cacgggatggtggagttccaggaaggtgtggagctggtggacgtccgggtcccactcttc
atcagggaagaagacgacgatgagaagcagttgcaggtggaggcgatggaggtccccatg
gggacagcggcgattggacgcaggctcgtcaatatcaccatcatcaaagagcaagccagc
agcatcatcacctttctgcagccagcctactctcacagccgcttcgaccaggtggccaga
atccctgtgcgtcgggagatcatggaaaacggaaaatcccagatcacctacagaactcgc
gatctcaccgcgaagcatggcaaggactacgtcttcgcagagggcgacttggtcttccag
cctggggagatgcagaaggaggtgcaggtggagctgctggagctgaccgagatcgatgcc
cttctgcagaaccgccagctcaaacagtttgccgtggatctgctcaaccccaagtacggc
gccaagatcggcaaatacccgcagaccacggtgaccatcactgacccagaggttgtggat
ggcatacagatcccaattggcctaggccagttccctcagtctcccagaggcaagctgggt
gcaccgctcaatccgaacgcccaagctctaagctccaggaaaatccgcttcaactggtta
ccaccgcctggcaaacccacagggtaccaggtgaagtactggatccaaggggaccctgag
tcggaggccaggctgatcaattccacagtgccatcagcagagctgaataacctatacccc
tactgtgactatgagatgcaggtctgcgcctacagcaacatgggcgaggggccctactcg
gatatcacccactgccgcaccctggaggacgttcccagcgaacctgggcgtctggctttc
aacgtcgtctcttccactgtgactcagctgagctgggctgagcctgccgagaccaacggg
gagatcacagcctacgaagtcagctacggacttgtcaatgaggacaatgttccctttggg
cccatgaagaaagttctggttgaggaggcgaagaagcgcatggttctgattgaaaacctg
cgggagtcgcagccgtaccgctacacggtgaaggccaagaatggagccggctgggggcct
gagcgagaagctacaatcaacctcgccacgcagcccaggcgcccaatgtccattcccatc
atccccgacatcccaatcatcgatgccgagggcggcgaagactacgacagctacttgatg
tacagcgcggacgtgatgcgctccccgtccggcagcaagcgccccagcgtctccgacgac
tccgagcatctgccgaatggccggatggatttcaccttccccggcagtgggggcaccctg
aacaggaccttgaatgctagctataaccagctgacctcacacatgcaccaggagaggagg
ctgatgggcagctcgtctctgaccagagattacagcacaatgacctcaggatatgaccag
ccagggaggattctcccttccatacgtgaagatggtggcaggatggccctgctgccccaa
gacgtaggtgtcaggagcagggcaaaggtgaagggttcctacgccagcaatggctttcgg
gattctataatcatgactgatgggcccactgggattgccaagtatatagattccagaatg
gccctgggcgtccctgacactcccacccgcctggtgttctctgcgctggggcccacctcc
ctgaaagtcagctggcaggagccgcagtgcgagaaagaggtgcaaggctacagcgtgcag
taccagctcctcagtggaggagacgtgtacagactgagcatccccaaccccactcacaac
tcggtggtggtggacaacctgctgccaaaccactcctacatattcaaggtgaaggcccaa
agcgaggagggctggggccccgagagagagggcgtcatcaccattgagtcccaggtggac
ccgcagagcccgctgagtcctgtaccaggttcaccgtttacattgagcacccccagtgca
ccaggacccctggtgttcactgccctgagcccggactcgcttcagctcagctgggagaga
ccccgcaaacccaacggggccattctgggctacatggtcacctgcgagatgctgcatgga
ggaggggaacccaggaatatctatgtggagggggacaacccagaaacctccctgacagtg
ccctacctgagcgagaacatcccctacaagttcaaagtgcaagccaagaccacccaaggg
tttgggccagaaagagagggcatcatcaccattgagtctcaagatggaggagctttctca
cagttcggagggcagcaatacatgagagaggaagtgtacaacctccccgcggaatacaac
accaccatcagccactcctctctggagccctactacacagatggcatgttgatgaccacc
cagcgggtggagagcagtggcaccctcaccaagcaggtcaccaaagagttcgtcagtagg
accatgatgtccagcggaacactcaccaaacagatggagacacagttcttcgaagactga
DBGET
integrated database retrieval system
