Thioalkalivibrio paradoxus: THITH_01430
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Entry
THITH_01430 CDS
T03590
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tti
Thioalkalivibrio paradoxus
Pathway
tti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITH_01430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tti03019
]
THITH_01430
Enzymes [BR:
tti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THITH_01430
Messenger RNA biogenesis [BR:
tti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THITH_01430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHE97159
UniProt:
W0DEX1
LinkDB
All DBs
Position
complement(302435..303766)
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AA seq
443 aa
AA seq
DB search
MTEATPERTRCADLDLPEPVLQGIREAGFEYCTPIQALTLPIALAGHDVAGQAQTGTGKT
AAFLLAAFDRLLRRDPPEGRRHNDVRMLVLAPTRELAIQIHKDALLLGAHTGLKFALAYG
GTGYERQREELQAGADVLIGTPGRIIDYHKQRVFGLKRVEVVVLDEADRMFDLGFIKDIR
YLLRRCSPPTERQSMLFSATLSWRVMELAYEHMNNPEKVQAQAETVTADRIRQVIYYPAN
EQKIPLLIGLARKLQPERAIVFVNTKHWAERVCDWLNANELKAALLSGDVPQTKRSRLLS
QFAEGKYRYLVATDVAARGLHIPDVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAISFG
CEDSAFYLPDIETYLGRRIPTEMLYPEDLPADLKRPPPRARRKPDERRGRAPRGSAREGG
RTPDRGPGRPGGGRRPRRPAPSS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagcgactccggaacgcacccgctgcgccgatctcgacctgcccgaaccggtc
ctgcagggcatccgcgaggccggcttcgaatactgcacgccgatccaggcactgacgctg
ccgatcgcgctggctggccacgatgtcgccggccaggcccagaccgggacgggcaagacg
gcggcctttctgctggcggccttcgaccggctcctgcggcgcgacccgcctgaaggccgg
cgccacaacgacgtgcgtatgctggtgctggcgccgacacgcgaactcgcgatccagatc
cacaaggacgctctgctgctgggcgcccacaccggcctgaaattcgcgctcgcctacggt
ggcaccggctacgaacggcaacgcgaggagcttcaggcgggggccgacgtgctgatcggc
accccgggccgcatcatcgactaccacaagcagcgcgtgttcggcctgaagcgcgtcgag
gtcgtggtgctcgacgaggccgaccgcatgttcgacctgggcttcatcaaggacatccgc
tacctgctgcggcgctgctcgccaccaaccgagcgccagtcgatgctgttctcggccacg
ctgtcctggcgggtgatggaactggcctacgagcacatgaacaacccggaaaaggttcag
gcgcaggccgagaccgtgaccgcggaccggatccgccaggtcatctactacccagccaac
gagcagaagattccgttgctgatcggccttgcccgcaagctgcagcccgagcgcgcgatc
gtgttcgtgaacaccaagcactgggccgagcgtgtctgcgactggctgaacgccaacgaa
ctgaaagccgcgctgctctccggcgacgtgccgcagaccaagcgcagccgactgctgtcc
cagttcgccgaaggcaagtaccgctatctcgttgcgaccgacgtggccgcccgcggcctg
cacatcccggacgtgacccatgtgttcaacttcgatttgccacagtccggcgaggactac
gtgcaccgcatcggccggaccgcccgcgccggcgcggaaggtgacgccatcagcttcggc
tgcgaagattccgcattctatctgcccgacatcgagacctacctgggccgccgcatcccg
accgaaatgctctaccccgaggatcttccggcggatttgaagcgcccccctccgcgcgcg
cggcgcaagcccgacgaacgccgggggcgcgcgccgcgtggcagcgcccgggaaggtggc
cgaacgccggaccgcggaccgggcaggcccggtggaggccggcggccgcgccgccccgcc
cccagctcctga
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