Tepidimonas taiwanensis: LCC91_12420
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Entry
LCC91_12420 CDS
T07546
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ttw
Tepidimonas taiwanensis
Pathway
ttw02020
Two-component system
ttw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ttw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LCC91_12420 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LCC91_12420 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ttw03021
]
LCC91_12420 (rpoN)
Transcription machinery [BR:
ttw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LCC91_12420 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
UBQ05321
LinkDB
All DBs
Position
complement(2632433..2633992)
Genome browser
AA seq
519 aa
AA seq
DB search
MKAGLALRVTQHLTLTPQLQQSIRLLQLSTLEVTQEVEQMLADNPFLERAEDDDAETPPA
APADEERDGATAPVDDADPPDTAAVWDEAGPRSGVEADWPARLDEDAGGWSADESPGADG
PDWSWEGPGLDRDGRDLDDENRPAASELASAHERLQDHLHRQALALHLSDEERAALYFLI
ESLDDDGYLTEPLEALSDAFWRQCHPDDAPPDPDARDEVLALLRRALGWLQAMEPAGVGA
RDLGECLRLQIGELPNTPAARAALALCAQPLEWIARRDTRRLAQATGLGEADVRAGLAVL
TRLEPKPGRRFADAERQIVVPDVIVTVRAGVCDVQLNPAVLPRLRVTDVYAQALRGQRHG
DLQQRLQEARWFIKNLQQRFDTILRVAQAIVERQRNFFLHGAVGMRPLVLRDIAEALGLH
ESTISRVTTAKYMATPFGTYEFKYFFGSGLATDAGGNASSTAVRALIKQLIAAEDPRQPL
SDGRIAELLKEQGIECARRTVAKYRESLRIPTASLRKSL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgggactcgcgctgcgcgtcacgcagcatctcacgttgacgccccagttgcag
cagtcgatccggctgctgcagctgtccacgctcgaggtcacgcaggaagtcgagcagatg
ctcgccgacaacccctttctcgagcgggcggaggacgacgacgcggagacaccgcccgcc
gccccggcggacgaggagcgcgacggcgcgacggccccggtggacgacgccgatcccccg
gacactgcggcggtgtgggacgaggccgggccccggtcgggcgtggaggccgactggccc
gcgcggctggacgaggacgcgggcggctggagtgccgacgagtcgcccggagccgacggt
ccggactggtcgtgggaaggccccgggctggaccgcgacggccgcgacctcgacgacgag
aaccgtccggcagccagcgaactggccagcgcgcacgagcggctgcaggaccacctgcac
cggcaggcgctggcgctgcacctaagcgacgaggagcgcgcggcgctgtacttcctgatc
gaatcgctggacgacgacggctacctgacggagccgctggaggcgttgagcgacgcgttc
tggcggcagtgccaccccgacgatgcgccgccggaccccgatgcgcgcgatgaagtgctg
gcgctgctgcgccgcgcgctcgggtggctgcaggcgatggagcccgcgggcgtcggggcg
cgcgacctgggcgaatgcctgcggctgcagatcggcgagctgcccaacacgccggcggcg
cgcgccgcgctggcgctgtgcgcccagccgctggagtggatcgcgcggcgcgacacgcgg
cggctcgcccaggccaccggcctgggcgaagccgatgtgcgcgccgggctcgcggtgctc
acgcgcctcgagcccaaacccgggcggcggtttgccgatgccgagcggcagatcgtcgtg
ccggacgtgatcgtcaccgtgcgcgcgggtgtgtgcgacgtgcagctcaaccccgcggtg
ctgccgcgcctgcgcgtgaccgacgtgtacgcgcaggcgctgcgcggccagcgccacggt
gacctgcagcagcggctgcaggaggcgcgctggttcatcaaaaacctgcagcagcgcttc
gacaccatcctgcgcgtggcgcaggcgatcgtcgagcgccagcgcaacttcttcctgcat
ggcgcggtgggcatgcgcccgctggtgctgcgcgacatcgccgaggcactggggctgcac
gagtcgaccatcagccgcgtcaccaccgccaagtacatggccacgccgtttggcacgtac
gagttcaaatattttttcggctcggggctggccaccgacgcgggtggcaacgcctccagc
accgcggtgcgggcgctgatcaagcagctcatcgccgccgaggatccgcgccagcccctg
agcgacgggcgcatcgccgagttgctcaaggagcagggcatcgagtgcgcgcgccgcacc
gtggccaagtaccgcgagtcgctgcgcatcccgaccgccagcctgcgcaaatccctctga
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