Tachysurus vachellii: 132847280
Help
Entry
132847280 CDS
T09596
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
tvc
Tachysurus vachellii
Brite
KEGG Orthology (KO) [BR:
tvc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tvc00536
]
132847280 (col13a1)
Glycosaminoglycan binding proteins [BR:
tvc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132847280 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132847280
NCBI-ProteinID:
XP_060728418
LinkDB
All DBs
Position
6:13903332..13979419
Genome browser
AA seq
698 aa
AA seq
DB search
MEQDTKVSRDSHGERTCAEHPCKSDAWPRRTEVCGAVAVCVALCLFSLGVSVLFYLRTSE
LQARVNSLEKHREPQQHSAWMFLEQVEPVLLNRLDQMLEEKLASRLPKTRETRDVSHACL
CPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGNTGDKGAPGEPGVSIIGPRGPPGQPGTRG
FPGFPGPIGLDGKPGQNGQKGDMGAPGPKGLPGEQGPKGEKGVCGDYTHRMLPITVRNMP
SISPLILKRLKQGEPGAQGPPGLPGPPGPPGSPGLTGANGPPGKPGEPGKPGKEVRMLTA
MKGEPGVPGQKGDRGDTGLTGPEGPKGFKGDQGQKGEEGKMGLAGEKGEKGERGMPGMPG
KQGVKGEIGFPGAPGLKGQTGIPGIPGKRGYKGEKGEMSSTGVGVKGEPGVPGLPGHKGQ
KGDQGIKGETGPEGQPGPRGPPGATGEPGKMLINNNENDIRNVQLMGPPGLPGPPGIPGA
KGEVGLPGPPGLDGEKGPRGKAGEPGAIGPPGLRGEGGVMGFPGPKGDKGDMGPAGSPGQ
KGDAGENGEKGEQMYGLPGPPGPAGPVGPMGPPGLSGPKGEPGLGVRGEKGSPGQKGDKG
DRGHLGLPGLIGPPGIPGPAGPKGERGEKGEMGVAGPIGPQGIPGLVGPPGLKGNRGERG
KRGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagacaccaaagtttctcgcgattcacatggagaaaggacttgcgccgagcat
ccgtgtaaaagtgacgcctggccgaggcgcactgaggtgtgtggtgcggtggcggtgtgc
gtcgcgctctgcctcttctctctcggagtgtctgtgctgttttatttgcgcacctcggag
ctacaggccagggtaaacagcttggagaagcacagagagccccagcagcactcagcctgg
atgtttcttgagcaggtggaaccagtgctcttaaatcgcctggatcagatgctggaagag
aagttagcatctcgtctgccaaagaccagagagactcgggatgtctcccacgcctgtctg
tgtccaccaggacctcctggtcctcctggacgagctggctttccgggagacaaaggatca
atgggcattcctggaagaatgggcttaaagggaaacacaggggacaagggagctccaggg
gagccaggtgtatctatcattggcccacgaggacctcctggtcagccgggcactagagga
tttcctggctttccgggtcctattggtttggatggcaagcctgggcaaaatggtcagaaa
ggagacatgggtgcaccaggtcccaaaggacttcctggtgagcaaggtccaaagggggaa
aagggtgtgtgtggtgattatacacatcggatgttgcccatcaccgtgcgcaacatgccc
tcaataagccctctaattctaaagcgcctcaagcagggtgagcctggagcacaaggaccc
ccagggcttcctggccctccagggcctcctggtagcccaggattgactggtgctaatggg
ccaccgggaaaacctggagaacctggaaaaccaggaaaagaagtgaggatgttgacagca
atgaagggagaaccgggtgtaccaggacaaaagggtgatcgtggtgatacaggattaact
ggacctgaaggccccaagggattcaaaggggatcaaggacagaagggagaggaggggaag
atgggtcttgcaggagagaaaggagagaagggtgaaagagggatgcctggaatgccagga
aaacaaggagtaaagggagaaattggttttccaggtgctcctggactaaagggtcagaca
ggtattcccggtattccggggaagcgaggctataagggtgaaaagggggaaatgagttct
acaggagttggtgttaaaggagaaccaggagtgccaggactgccaggacacaagggtcaa
aaaggtgatcaaggcattaagggtgaaacaggacccgagggccaaccaggaccaagaggt
cctccaggtgcaacaggagaaccaggcaaaatgttaataaacaacaacgagaatgatatt
cgtaatgtgcagctaatgggcccacctggtctacctgggcctcctgggatacctggtgcc
aagggtgaagttgggctgcctgggcctcctggtctcgatggggaaaagggtcctcgggga
aaagcaggagagcctggagccattggcccacctggactgcgaggagagggaggagttatg
ggcttcccgggacctaaaggggataaaggagacatgggtcccgctggatcacctggtcag
aaaggtgacgctggtgagaatggagaaaaaggagaacagatgtatggcctaccaggacct
ccaggacctgcagggccagtggggccaatgggacctccaggattgtcagggccaaagggg
gagccaggtctgggtgtgagaggagagaaaggatcacctggacagaaaggagataaagga
gatagaggtcatcttggattaccaggtcttataggaccgcctggtatacctggaccagca
ggaccaaaaggagagaggggtgagaaaggagaaatgggagtagcaggaccaatagggcct
caaggcatccctggcttagtaggaccaccaggattaaaaggaaaccggggggagaggggc
aagagaggcaacaggggggccaaaggggataagggagaccaaggagccccaggattagat
gccccttgtcctttgggtgatgatggcctaccagtaccaggatgttggaataaatga
DBGET
integrated database retrieval system