Thalassomonas viridans: SG34_024905
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Entry
SG34_024905 CDS
T08831
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
tvd
Thalassomonas viridans
Pathway
tvd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SG34_024905 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvd03019
]
SG34_024905 (pcnB)
Enzymes [BR:
tvd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
SG34_024905 (pcnB)
Messenger RNA biogenesis [BR:
tvd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SG34_024905 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Fungal_trans
Motif
Other DBs
NCBI-ProteinID:
WDE08387
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All DBs
Position
5635188..5636618
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AA seq
476 aa
AA seq
DB search
MIKSVINLCKKVLGRKTNKTEKKATFSNPVILTRDQHPVSRKHISTNALKVLYRLNKGGY
DAYLVGGGVRDIILGLEPKDFDIATNATPEQIKDLFRNCRLIGRRFRLAHIVFGRDVIEV
ATFRGHHDNNNQDQGKGNHKISKQSEHGMLLRDNIYGSIEEDAERRDFSINALYYSVTDF
KVYDFANGVEDIHNRTIRLIGDPETRYREDPVRMLRAIRFATKLDMTIDEETQAPISELA
PLLANIPAARMFEEFNKLFLSGKAGENFDMLRDYGLFKYFFPVVDQSLEQDDDVHLNAFI
RLAMKNTDLRINNNQRVTPAFLLAAMLWYPLQARIQRLNAASQLTPQDAFFAAYNELISE
QQHSISIPKRFQLVMKDIWILQDKLARRDGKRAYKSFEHPKFRAGYDFLLLRGEIEGGPA
QELAKWWTDFQSAHPETQQQMIKAVSANRPGGRRPGRKRKKPGQNANKASSEKNSA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
attatcaaaagcgtgattaatctgtgtaaaaaagttctgggaagaaaaaccaacaaaacg
gaaaaaaaagcaaccttttccaacccggtaattttaacacgtgatcaacatccggtttcc
cgtaaacacatcagcaccaacgccctgaaagtcctgtatcgcctcaacaaaggcggttac
gacgcttatctggtaggcggcggcgtcagggatattattttgggactggaaccgaaagat
tttgatattgccaccaatgccaccccggaacaaattaaagacctgttccgcaactgccgc
ctcatcggccgccgctttcgtttagcccatatcgtttttggccgcgatgttatcgaagtc
gccaccttccgcggacaccacgacaacaataaccaggaccagggcaaaggcaaccacaaa
atctccaagcaaagcgaacacggcatgctgctcagggataatatttacggctccatcgag
gaagacgccgaacgccgcgatttttccatcaatgccctgtattactcggtcacagacttt
aaggtctacgattttgccaatggcgtcgaagacatacataaccgcaccatacgtttgatc
ggcgatcccgagacccgctaccgcgaagatccggtgcgtatgctgcgcgccatacgtttt
gccactaagctggacatgaccatagacgaggaaacccaggcgcccattagcgaactggcg
ccgctgctggccaatatacccgccgcccgcatgttcgaagaattcaacaagcttttcctt
tccggcaaggccggtgaaaactttgacatgttaagggattacggcctgtttaaatatttc
ttccctgtggtggatcaaagcctggagcaggatgacgacgtccacttaaacgcctttatc
cgcctggcgatgaaaaataccgacctgcgcatcaacaacaaccaaagagtgaccccggca
tttttactggcggccatgttgtggtatccgctgcaggcgcgtatccagagattaaacgcc
gccagccagttaacgccgcaggatgccttttttgccgcctataacgagctgatatccgag
cagcaacacagtatttccatcccgaaacgcttccagctggtgatgaaagatatctggatt
ctgcaggataagctggcgcgccgtgacggcaaacgcgcctataaaagttttgaacacccg
aaatttagagcaggttatgacttcctgttgctgcgcggcgaaatagaaggcggaccggca
caggagctggccaaatggtggacggatttccaatctgcccatccggaaacccagcaacaa
atgatcaaagccgtcagcgccaaccgccccggaggccgcaggcccggccgcaaacggaaa
aagcccggccagaacgccaacaaggcaagttctgagaaaaacagcgcctga
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