Trinickia violacea: FAZ95_25140
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Entry
FAZ95_25140 CDS
T09503
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tvl
Trinickia violacea
Pathway
tvl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FAZ95_25140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvl03400
]
FAZ95_25140 (ligD)
Enzymes [BR:
tvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FAZ95_25140 (ligD)
DNA repair and recombination proteins [BR:
tvl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FAZ95_25140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DUF2625
IMS
Motif
Other DBs
NCBI-ProteinID:
QCP52457
UniProt:
A0A4P8IW15
LinkDB
All DBs
Position
2:689264..691777
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AA seq
837 aa
AA seq
DB search
MPSIPPDRTRLPLSNYRKKRDFRVTPEPAPSAASPLADDQRLAFVVQKHWSGRLHYDFRL
ELGGVLLSWAVPKGPCYDPKEKRMAIHVEDHPVDYASFEGTIPPKQYGAGTVLVWDHGTW
EPVGDAHEAVKAGKLVFRLHGEKLAGLWELVRIAKPEDTQDSWMLFKKRDEWAQPLAEYD
VIKALPDSVVTKPLGLVEEREPKSARPSSGVDTEIDLSAAAPAPLPAKLEPQLATPADSL
PTGGDWITEAKLDGYRMLARIDKGRVRLFTSGGHDWTKKLVGLAAEVEKLAVSSAWLDGE
IVVLKDGIPDFAALQDAMDGPSDRSIVYFVFDVMYLDGKDLRKVPLWARRAALSELLENA
GDRIRFSQDFQAPPAQVFEAAAELGLEGLMLKRRDASYVSGRSQTWLKAKCRLRQELVIC
GFTNRSGTAGEIGSLLLGYYADGTLHDAGSVGTGWDARTARDLWARLTPLEVDSPPFDVA
AAKPRRWSRRAAGGERWVQPVLVAELEFAAWTTDGLVRQASFKGLRVDKSASGVIREAGK
ALSTNPVPQVRVTHPERIIDPSTGVTKLDLARYYASVAQWMLPHLKDRPLAMLRAPNGIA
EEVFFQKHAEKTGMPGLTAHDGSLWPGHPSLLTVDTLDALLSAAQMNVVEFHTWNSTVRR
LDKPDRVIFDLDPGEGVKWVHIQEAALLVHTLLLELGLKAWLKTSGGKGLHVVVPLTPRL
DYEEVKSFSRAFVRHIAKTIPERFSATSGAANRVGRVYVDFLRNGMGQTTAAAFSARARP
GMGVSMPVSWEQLSALKSGAQWNVQTAREYLSFQSEDPWADYWSTKQTLASALKRLQ
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccctccattccccctgaccggacacgtttgccgctgtccaactaccggaagaagcgt
gatttccgcgtcacgccggagcccgcaccgtcggctgcgagcccgttagctgacgaccag
cgactggcctttgtcgtgcaaaagcattggtctggccggctgcactatgacttccgactc
gaactgggtggagtcttgctgtcctgggccgttccgaagggtccctgctacgacccgaag
gaaaagcggatggcgattcacgtcgaggaccatcccgtcgactatgcgagcttcgaaggc
actatcccacccaagcagtatggcgccggcaccgtgcttgtatgggaccatggaacgtgg
gaacccgtcggtgacgctcacgaggccgtgaaagcgggcaagcttgttttccgactccac
ggtgaaaagctggccggactgtgggagctggtgcgcatcgcaaagccggaggacacgcag
gactcgtggatgctcttcaagaaacgcgacgagtgggcgcaaccacttgcggagtacgac
gtcatcaaggcgcttcccgacagtgttgtcacgaagccgcttgggcttgtggaagagcgc
gagcccaaatcggctcggccctcgagcggcgtggatacggaaatcgacctctctgctgca
gcgccggcgccgcttcccgcgaaactcgagcctcaacttgcgaccccggcagattccctg
cctacgggaggagactggataaccgaggccaagctggatggttatcgaatgctcgcgcga
atcgataaggggcgcgtgcgactgttcaccagcggaggacacgactggacaaagaagctc
gtaggtctcgccgcagaggtggaaaagctagcagtttccagtgcgtggctcgacggcgaa
attgtcgttctcaaagacggcattccggatttcgccgcgctgcaggatgcgatggacggc
ccgtccgaccggagtatcgtctacttcgtgtttgatgtgatgtatctcgacggaaaggac
ctgcggaaggtgcccctgtgggcgaggcgcgcggccctcagcgagcttttggaaaatgcg
ggcgaccggattcgcttcagtcaggactttcaggcgcccccggctcaggtatttgaagcc
gccgcggaactgggtcttgaaggcctgatgctcaaacggcgtgatgcgtcgtacgtctcg
gggaggtcgcagacgtggttgaaggcaaagtgccggctgcggcaggagctcgtcatctgt
ggcttcaccaatcgcagcggcacagctggggaaatcggcagcttgctgctcggatactac
gccgacggcacgctccacgacgccggcagcgtcggcaccggatgggatgcccggactgcg
cgggacctgtgggcccgcctcaccccgctcgaagtagactccccgccctttgatgtcgcc
gctgcgaaaccacggcggtggtcaagacgggccgccggcggcgagcgctgggttcaaccc
gtgttggtggcggagctcgaatttgccgcctggaccacggatggtctcgtgcgacaagcc
tcgttcaaaggactgcgcgtcgacaaatccgcaagcggtgtcatccgcgaagcaggtaag
gcgctttcgacgaatcccgttccccaggtcagggttactcaccccgagagaatcattgac
ccgtcgactggcgtcacgaagctcgacctggcccgctactacgcgagcgtcgcgcagtgg
atgctgcctcacctgaaggaccgcccgttggcgatgctccgcgcgccgaatggcatcgcc
gaagaggtttttttccagaagcacgcggagaagacgggcatgcccggtctgacggcacac
gacgggagtctgtggccaggacacccatccttgctgactgtcgacacgctcgatgcgctg
ttgtcggcagcgcaaatgaacgtcgttgaatttcacacctggaactcgacggttcgacgg
ttggataaacccgaccgggttattttcgacctggacccaggtgaaggcgtgaaatgggtg
cacatacaggaggcggcactccttgttcacacgcttttgctagagctaggtctcaaggcg
tggctgaaaacaagcggcggcaaagggctgcacgtcgtcgtgccattgacgccacgactt
gattacgaggaggtgaagtcgttctcgcgggcgtttgttcgacacattgcgaagacaatt
cccgagcgtttttccgcgacatcaggcgccgccaaccgcgtcggcagggtttatgtcgac
ttcctgcgcaacgggatggggcagacgacggcggccgccttctcagcccgcgcccgtccc
ggcatgggggtttcgatgccagtctcttgggagcagttgtccgccctgaaaagcggggcg
cagtggaatgtgcagacagcgcgcgagtatctcagcttccagtcggaggacccgtgggcg
gattactggtcgacgaagcagacgttggcgtcagcgttaaagcgcctacaataa
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