Thalassolituus marinus: HUF19_06420
Help
Entry
HUF19_06420 CDS
T08537
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
twan
Thalassolituus marinus
Brite
KEGG Orthology (KO) [BR:
twan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
twan03032
]
HUF19_06420 (topA)
03400 DNA repair and recombination proteins [BR:
twan03400
]
HUF19_06420 (topA)
Enzymes [BR:
twan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HUF19_06420 (topA)
DNA replication proteins [BR:
twan03032
]
Prokaryotic type
DNA Topoisomerases
HUF19_06420 (topA)
DNA repair and recombination proteins [BR:
twan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HUF19_06420 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Toprim_2
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UXD87098
LinkDB
All DBs
Position
complement(1459718..1462372)
Genome browser
AA seq
884 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTSGSGQPSDPKERAKQAALTRK
MSPEAKAEYKKKKSREQLIGRMGVNPEKHWEANYQVLPGKEKVVEELQRLAKDADQIYLA
TDLDREGEAIAWHLREIIGDSKKEYRRVVFNEITKKAIQSAFEQPSELNMNRVNAQQARR
FLDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREREIRAFIPQEYWETFADLSTP
AGEALRAQVMRQNGNEFRPVNEQDTMSAVAALRGHRYEVLKREDKPTSSKPAAPFITSTL
QQAASTRLSFSVKKTMTLAQRLYEAGYITYMRTDSTNLSQEAVSNVRDYISDKLGEQYLP
DEPRSYSSKEGAQEAHEAIRPSDVRLRATDLSAMEPDAQRLYDLIWRRFVACQIKDAQFT
STSITVKAGEFELKTRGRVMRFDGHLKVLAAMGKGEDDVLLPDVSEGDTLQLVELEPKQH
FTKPAPRFSEAALVKELEKRGIGRPSTYASIISTIQERGYVSLKGRRFYAEKMGDIVTSR
LVENFDDLMDFGFTASMEEKLDHIAEGDMNWTDVLDEFYQGFQQKLEAAEGEDGMRPNDP
VDTDIPCPTCGRHMQIRTGSTGVFLGCSGYSLPPKERCTQTLNLVPGDEAISADEDEEAE
SRRLMDKRRCSICDSAMESYLLDETRKVHICGNNPDCSGFAVETGQFKIKGYDGPTLECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEAAPPKMEPIAMPELKCQKVDDTYVL
RDGATGLFLAASQFPKKRETRAPLVEELLPHQAELPQKYHFLLDAPRQDPEGNPAIIRYS
RKTKEQYVMSEKDGKATSWSAYYVDNKWVEHDKKKAPAKKADKA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggttatcgtggagtcgcctgcaaaggccaaaaccatcaataaatac
ctcggcaaggactttattgttaagtccagcgtgggccacgttcgcgacctgccaacctct
ggttcaggccagcccagcgaccctaaagagcgcgccaaacaggcggctctcacccgtaaa
atgtcgcccgaagccaaggccgaatacaaaaagaaaaagtcccgcgagcagttaattggc
cgcatgggcgttaacccggaaaaacactgggaagccaactatcaggtgctgccgggcaaa
gaaaaagtggtcgaagaactgcagcgattggccaaagatgccgaccagatctatctcgca
acggatttggaccgcgagggagaagccatcgcctggcaccttcgtgagattattggcgac
agtaaaaaagaataccgccgtgtggtctttaacgagattaccaaaaaagccattcagagc
gcgttcgaacagccatctgagctgaatatgaaccgtgttaacgcccagcaggcacgccgt
ttcctcgaccgggttgtcggttttatggtgtcaccactgctgtggagcaaggtcgcgcgt
ggtttatccgccggccgggtacagtcggttgctgttcgtctgattgttgagcgcgagcgg
gaaatccgtgcctttattccacaggaatactgggaaaccttcgccgacctgagcaccccg
gccggtgaagctttgcgcgcccaggtaatgcgccagaacggtaacgaattccgtccggtt
aacgagcaggacaccatgtccgccgtcgccgcgctgcgtggccaccgctatgaagtatta
aagcgcgaagacaagccgaccagttccaaaccggctgcgccttttatcacctccacgctg
cagcaggctgccagtacacgtctgagtttcagtgttaagaaaaccatgacgctggcgcag
cgcctgtacgaagccggttacatcacttatatgcgtaccgactcgaccaatctgagtcag
gaagccgtcagcaatgtgcgtgattacatcagcgataaactgggcgagcagtatctgccg
gatgaaccacgcagctacagcagcaaagaaggtgcacaggaagcgcacgaagcgatccgc
ccttccgatgtccgcctgcgtgcaaccgatctcagcgctatggaaccggatgcacagcgt
ttatacgatctgatctggcgccgttttgttgcctgtcagattaaagacgcgcaattcacc
agcaccagcattacggtcaaagccggcgagtttgaactgaaaacccgcggtcgcgttatg
cgctttgacggccacctgaaagtattggccgcgatgggcaaaggcgaagatgacgtactg
ctgccggatgtcagcgaaggcgataccctgcagttggtcgaacttgagccgaagcaacac
ttcaccaaaccggcgccgcgcttttcggaagccgcactggttaaagagctggaaaaacgc
ggtatcggccgtccttcaacctatgcatcaattatttccaccatccaggagcgtggttac
gtcagcctgaaaggccgtcgtttttacgcggaaaaaatgggggatattgtcaccagccgt
ctggttgagaacttcgacgacctgatggacttcggctttaccgccagcatggaagaaaaa
ctcgaccatattgccgagggtgatatgaactggaccgatgttctggacgagttttatcag
ggctttcagcaaaagcttgaggctgctgaaggtgaagatggcatgcgtccgaatgacccg
gtcgacaccgatattccatgccctacctgtggccgccatatgcagatacgcacgggttct
accggtgtattcctcggttgttccggctacagcctgccgccaaaagaacgctgcactcaa
acgctcaatctggtaccgggcgatgaagccatctccgccgatgaagacgaagaggcagaa
agccgccgcctgatggataagcgccgttgcagcatctgcgacagtgccatggaaagctat
ctgctggacgaaacccgtaaagtgcacatctgtggtaataacccggactgcagcggcttc
gccgtagaaaccggccagttcaagattaaaggctatgacggtccaacacttgaatgcgat
aaatgcggcagtgaaatgcagctgaaatccggtcgcttcggcaaatactttggctgtacc
aacagcgaatgtaagaacacccgcaaattattgaagagcggcgaagcagcacctccgaaa
atggagcctattgcgatgccggaactgaaatgtcagaaagtagacgacacctacgttctg
cgtgacggcgcaacgggcttgttcctcgctgccagccagttcccgaaaaaacgcgaaacc
cgtgctccactggttgaagaattacttcctcatcaggccgagctgccgcagaaataccat
ttcctgctggatgctccgcgccaggatccggaaggtaatcctgccatcatccgttacagc
cgcaaaaccaaagagcagtatgtaatgagtgaaaaagacggcaaagccaccagctggtcg
gcctattacgtcgataataaatgggttgagcacgacaagaaaaaagcacccgccaaaaag
gccgacaaagcctga
DBGET
integrated database retrieval system
