Ustilago maydis: UMAG_10551
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Entry
UMAG_10551 CDS
T01021
Name
(RefSeq) putative TFIIH subunit (transcription initiation factor), factor B
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
uma
Ustilago maydis
Pathway
uma03022
Basal transcription factors
uma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
UMAG_10551
09124 Replication and repair
03420 Nucleotide excision repair
UMAG_10551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uma03021
]
UMAG_10551
03400 DNA repair and recombination proteins [BR:
uma03400
]
UMAG_10551
Transcription machinery [BR:
uma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
UMAG_10551
DNA repair and recombination proteins [BR:
uma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
UMAG_10551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
23566567
NCBI-ProteinID:
XP_011392150
UniProt:
A0A0D1DQL7
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All DBs
Position
19:109559..111109
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AA seq
516 aa
AA seq
DB search
MPPRIADDEYIDDGAGAYDAEDFLDDDDSGDEYRAAPSLPKLGTLRGAGAGGASRSSAAA
SNGRAGTLAAGSSASSSGTARAKAAANAKSKQKDQGYSWEATYKRSWDAVAEDDSGSLES
TVRSMIEGSKRRRVLKDVAPVQRGIIRHLVLLIDLSASMLEKDMRPNRFDVTLQYAREFV
GEYFDQNPIGQLSIIGTRSGIAERLAMMGGNTVDHTASLSNKRRLEPRGEPSLQNALEMA
RSSLVHLPASNSREILAIFGSLTTCDPGNIHDTIATLVKDNIRVSIVHLAAEVKVFKDVC
TRTGGTFSVALNEGHFHDSLFELVPPPAVEGKPRRTRQHMVGIADGSTAMDAEDDDEDGV
QAGVDLLQMAFPLRLPAHAAPTLCACHSRSRGSGYLCPRCGVKVCNVPTDCPVCGITIVM
STHLARSYHHLFPVPNWKAVPWSSVTPDSDGACFSCNVPFPSLQERKEKSAAANKALEEA
GLSPSSRYRCGRCAIDFCLECDAFVHEQLHVCPGCC
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgccgcctcggatagcggatgacgaatatatcgacgatggcgccggtgcatatgatgcc
gaagacttcctggacgatgatgacagcggtgacgaataccgggcggcgccatcgctaccg
aagctaggcacgctgcgcggtgctggtgccggtggtgcatctcgctcgtcggcagctgcg
tcaaatggcagggctggtactttggctgctggatcgtctgcctcttccagtggcactgct
cgagccaaggcagcagccaacgcaaaatccaagcaaaaagatcagggatattcgtgggaa
gccacttacaagcgatcatgggatgctgttgctgaagacgattccggctcgctcgagagc
acagtgcgatccatgattgaaggctcgaaacgtcgacgtgtgcttaaggacgttgcgccg
gttcagcgtggcattatccgtcacctcgttctgctcatcgatctatcggccagcatgctg
gagaaggacatgcgaccaaaccgctttgatgtgacacttcagtacgcacgcgagtttgtg
ggcgaatactttgaccagaaccccatcggacaactctcgatcatcggcacgcgttccggc
atcgcagagcggcttgccatgatgggaggcaacacagtcgatcatacggcgtcgctttcc
aacaagcgtagactcgaaccgcgcggcgagccgtcgcttcagaatgcgctcgaaatggcc
aggagtagtctggtacatttgccagcttcaaattcgcgagagatcctcgccatctttggc
agcttgactacgtgcgatccgggcaacatccacgataccatagccacgctggtcaaggac
aacattcgcgtgtcgattgtgcaccttgctgctgaggtcaaggtgttcaaggacgtgtgc
acgcggacgggcggtacattcagcgttgcacttaacgaagggcattttcacgattcattg
tttgagctagttccgccaccggcagtcgaaggaaagccgaggcgaacaaggcagcacatg
gtgggtattgcagacggttcaaccgcgatggatgcggaagacgacgatgaggatggagtg
caggcaggcgtagatctgctccagatggctttcccactccgactaccggcacatgcagca
ccaacgctgtgcgcatgtcactcgcgctcgcgcggtagtggatacctctgtccgcgctgc
ggtgtcaaagtatgcaatgtgccgaccgactgtcccgtctgtggaatcacgatcgttatg
tcgacgcaccttgcacggtcgtaccaccacctgtttcctgttcccaactggaaagctgtg
ccgtggtcctcggtgacacctgactctgacggcgcgtgtttttcgtgcaacgtaccgttc
ccttcattgcaagagcgcaaagagaagagtgcggcggctaacaaggcgttggaggaggct
ggcttgtcgccgagctccagatatcgctgcggcaggtgtgcaatcgacttttgtttggag
tgcgatgcctttgtacacgagcagcttcatgtatgtcctggttgctgttga
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