Variovorax sp. PMC12: C4F17_01920
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Entry
C4F17_01920 CDS
T05380
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_01920
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
Other families
C4F17_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_2
AAA_5
HTH_29
HTH_23
HTH_30
Mg_chelatase
PAS_8
HTH_28
IclR
HTH_IclR
HTH_38
HTH_1
HTH_17
Sigma70_r4_2
HTH_20
HTH_11
AAA_16
PAS
HTH_22
ATPase
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AVQ79807
UniProt:
A0A2P1V3P4
LinkDB
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Position
1:complement(421102..422973)
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AA seq
623 aa
AA seq
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MSEAQWPSVRVEQARDLFFVQGRDPAPWIAPHISRSWQRSRPVDHQHIDPAPMALALLGE
RREQSMRLLDCAQPELDGLAEHAIGNGCVVILSDATGLILEEIGSPDFLPKAERIALQPG
VEWSEHNRGTNAIGTALAEREALMVLGGEHYLAQNGALGCAAAPIFTGRGELAGALDISG
ETVRVNTHALGLVRMAAQQVEHRMLLAEAQGHVLRFHARPALIGTAREGLIVIEGGRIAA
ANRVALELFGRSWDGLLDLEARDFLGPNWPRMEHRRSLLTLPGGRQIATVMERSSTQGGA
RPAARRADAPQAADDVLPLLDKAVRVLNEGVSVLVNGETGSGKEVFSRRLHAASRRAGGP
FVAVDCASLPETLIESELFGYDEGAFTGARRKGMAGRIREANGGVLFLDEIAEIPLALQT
RLLRVLEERVVTPLGGGQGVSVDFDLVCATHGDLPALVQAGRFRADLMYRVAGFTVALPP
LSRRADRHALIARLFLESGGADKHLRLESDALEALAAYRWPGNVRELRSTLRAVVALADP
GDSVTAAALPAHLFGTPAAPPPDAATEAAPAPQAGPLLDITRHAIDEALRACDHDVSRAA
RRLGVHRSTVYRHLARQRGKPSA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcgcagtggccatcggtccgggtcgaacaggcccgggacctgttcttcgtg
cagggccgcgaccccgccccgtggatcgcgccgcacatctcgcgctcgtggcagcgcagc
cgtccggtcgaccaccagcacatcgacccggcccccatggcgctggccctgctgggcgag
cggcgcgagcagtcgatgcggctgctggactgtgcacagcccgaactcgacgggctggcc
gagcatgcgataggcaatggctgcgtggtgatcctgtcggacgccaccgggctgattctg
gaggagatcggcagccccgacttcctgcccaaggccgagcgcatcgcgctgcagcccggc
gtggaatggtcggaacacaaccgcggcaccaacgccatcggcaccgcgctggcggaacgc
gaggcgctgatggtgctgggcggcgagcactacctggcgcagaacggcgcgctgggctgc
gcggccgcccccatattcaccggccggggggagctggccggcgcgctcgacatctcgggc
gagacggtgcgcgtgaacacgcacgcgctgggcctggtgcgcatggccgcgcagcaggtg
gagcaccgcatgctgctggccgaggcgcagggccatgtgctgcgcttccatgcgcggccg
gcgctgatcggcaccgcgcgcgaggggctgatcgtgatcgagggcggacgcatcgctgcg
gccaaccgcgtggcgctggaactgttcggccgctcatgggacggcctgctcgacctggag
gccagggacttcctcggcccgaactggccgcgcatggagcaccggcgcagcctgctgacg
ctgcccggcgggcggcagatcgccaccgtgatggagcgctccagcacgcagggcggcgcg
cggccggcggcacggcgcgccgacgcgccccaggcggctgacgacgtgctgccgctgctc
gacaaggccgtgcgcgtgctcaacgaaggcgtgtcggtgctggtcaatggcgagaccggc
agcggcaaggaagtgttctcgcggcgcctgcacgccgcgagccgccgcgcgggcggcccg
ttcgtggcggtcgactgcgcctcgctgcccgagacgctgatcgagtcggagctgttcggc
tacgacgaaggcgccttcaccggcgcccggcgcaagggcatggcgggccgcatccgcgag
gcgaacggcggcgtgctgttcctcgacgagatcgcggagattccgctcgcgctgcagacc
cggctgctgcgggtgctggaagaacgcgtggtcacgccgctgggtggcggccagggcgtg
tcggtggacttcgacctggtctgcgccacccacggcgacctgccggcgctggtgcaggcc
ggccgcttccgggccgacctgatgtaccgcgtggccggtttcaccgtcgcgttgccgccg
ctgagccggcgcgccgaccggcacgcgctgatcgcgcggctgttcctcgaatcgggcggc
gccgacaagcacctgcggctggagagcgatgcgctcgaagcgctggccgcctaccgctgg
ccgggcaacgtgcgcgagctgcgcagcacgctgcgcgcggtggtcgcgctggccgacccg
ggcgattcggtgacggccgccgccctgcccgcccacctgttcggcacgcccgccgcgccg
ccgccggatgcagccaccgaagccgccccggcaccgcaggccggcccgctgctggacatc
acccgccacgccatcgacgaagcgctcagggcctgcgaccacgacgtgtccagggcggcg
cggcgcctcggcgtgcatcgcagcacggtctaccgccatcttgcgcggcagcgcggcaag
ccgtccgcctga
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