Variovorax sp. PMC12: C4F17_17140
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Entry
C4F17_17140 CDS
T05380
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_17140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_17140
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4F17_17140
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4F17_17140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Flavi_DEAD
DUF3626
Motif
Other DBs
NCBI-ProteinID:
AVQ82538
UniProt:
A0A2P1VBI4
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All DBs
Position
1:complement(3712516..3713799)
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AA seq
427 aa
AA seq
DB search
MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL
QRLGAERAQGASRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM
MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILAMLPK
QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL
LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD
VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF
RLIEKRQGLSLPREQVEGFEPTEVAPPVVDASGTGGIKGKRPSKKDKLRAAAAKAAARDT
AGGKSEG
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgccattcgattcactgggcctggcccccgcgctcgtgcacgccgccgccgaaagcggc
tatgccgcaccgaccgccatccaggccgcggccatccccgcgattctgcagggccgcgac
gtgcggggctcggcgcagaccggctccggcaagaccgccgcattttccctgccgctgctg
cagcgcctgggcgccgagcgagcgcagggcgcctcgcgccgcgtgcgcgccctggtgctg
gtgcccacgcgcgaactcgcggcccaggtcggcgagaccctgcgcagcctcgcgcagcac
ctgcccgaacggctgaagatcgtcgtcgccttcggcggcgtgtcgatcaacccgcagatg
atgagcctgcgcggcggcgccgacatcgtcgtcgccacccccggccggctgctcgacctg
gccgaccacaacgcgctgcggctcgacgccgtcgccacgctggtgctcgacgaggccgac
cgcctgttcgacctcggcttcgccgaagagctgggccgcatcctcgcgatgctgccgaag
cagcgccagaacctgctgttctccgccaccttcccgcctgccatccaggcgctggccgac
gccacgctgcgcgaccccgccgtcatcgacgtgcagggcgagcccggcaccgagcccaac
atcgtgcagcgcgtgatcgaggtcgacgccgcgcgccgcacgcagctgctgcggcacctg
ctcaagcagcacgaaggcgagtgggaccgggtgctggtcttcgtcgccacgcagcatgcc
gcgcagaccgtggccgagaagctctacaagaacggcatctacgccgtgcccttccacggc
gacatcgcgcagggcacgcgaaccgacatcctggcgcagttcaagcagagccgctgggac
gtggtcatcgccaccgacctggccgcgcgcggcatcgacatcgcgcagctgccggtggtc
atcaactacgacctgccgcgctcgccgaccgactacatccaccgcatcggcagaaccggc
cgcgcgggcgagagcggcctggcgatcagcttcgtgagcgcggcgagcgaggcgcacttc
cgcctcatcgagaagcgccagggcctgagcctgccgcgcgagcaggtcgagggcttcgag
ccgacggaggtggcgccgccggtggtcgacgcctcgggcacgggcggcatcaagggcaag
cggccgagcaagaaggacaagctgcgcgcggcggccgcgaaagccgcggcacgcgacact
gccggcggcaagagcgaaggctga
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