Variovorax sp. PMC12: C4F17_28615
Help
Entry
C4F17_28615 CDS
T05380
Name
(GenBank) 6-carboxyhexanoate--CoA ligase
KO
K24012
acetate---CoA ligase (ADP-forming) [EC:
6.2.1.13
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00010
Glycolysis / Gluconeogenesis
vam00620
Pyruvate metabolism
vam00640
Propanoate metabolism
vam01100
Metabolic pathways
vam01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
C4F17_28615
00620 Pyruvate metabolism
C4F17_28615
00640 Propanoate metabolism
C4F17_28615
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vam01004
]
C4F17_28615
Enzymes [BR:
vam01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.13 acetate---CoA ligase (ADP-forming)
C4F17_28615
Lipid biosynthesis proteins [BR:
vam01004
]
Acyl-CoA synthetase
Short/medium chain acyl-CoA synthetase
C4F17_28615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-grasp_5
Succ_CoA_lig
CoA_binding_2
CoA_binding
ATP-grasp_2
Motif
Other DBs
NCBI-ProteinID:
AVQ85025
UniProt:
A0A2P1VIL9
LinkDB
All DBs
Position
2:complement(246200..248299)
Genome browser
AA seq
699 aa
AA seq
DB search
MNDAIAKLLSPRSVAVIGASADPKKTTGRPVAYLQKHGFSGRILPVNPKVERIGELPCYP
DIASLPEVPDVAVVLLGAERAHLAVKELSQRGCAAAIVLASGYTETGEEGARRQQQLVEA
AGTMRILGPNTIGLVNLTDNIVLSPSGALEMDEFQAGGIGVVSQSGGILGSLLSRAAARG
IGLSKLISTSNEVDLELADFIDHLADDPATKVIALYVETVRDPAKFRAACLKAARLGKPV
VAFKIGRSEAGAKAAVSHTGAMAGADSVYDALFRQVGVIRAQSFSDLLDIPVALSTGRRL
RGGRVAILTSTGGAGTLVSDDLGVAGFDTPAPDEATANALRALQSGSEAVLDRNPIDVTL
AGLRPDLLRGAINALLASPSYDALVIIVGSSSLAMPELLAGAIQECLPNSDKPVMAYVSP
HAPEVGALLTRRGVPAFTAAESCTAALAGMLRVQRFMAPAQDDAALPPVEACDFPSGSLD
EAKAKQLFARFGVPCASERVVASPAEAEAAARELGGRVVLKILSSEITHKSDVGGVAVGL
DGDTIGERIGRMAAEVKARTGVHPQHFLVQEMVAGGTELILGMHRDALGTAILLGMGGVT
AELFKDTSMRLLAQDAQGLKPLGRTEALSMARDLKTWPLLDGFRGRPKADVEALVDAIVA
FSRMAAQLGERLVEAEINPVFVLPQGQGVRAADGVVVLA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgccatcgccaagctgctgtcgccacgcagcgtcgccgtcatcggtgcctcg
gcagacccgaagaaaaccaccggccggcccgtcgcctacctgcagaagcacggcttctcc
gggcgcatcctgccggtgaacccgaaggtcgagcgcatcggcgagctgccgtgctacccc
gacatcgcctcgctgcccgaagtgcccgacgtcgccgtcgtgctgttgggcgccgagcgt
gcgcacctggccgtgaaggagctgtcgcagcgcggttgcgccgccgccatcgtgctggcc
agcggctacaccgaaaccggcgaggagggtgcgcggcgccagcagcagctggtggaggca
gcagggacgatgcgcatcctgggccccaacaccatcgggctcgtcaacctcacggacaac
atcgtcctgtcgccgtccggtgcgctggagatggacgagttccaggccggcggcatcggc
gtggtctcgcagagcgggggcatcctgggctcgctgctgtcgcgcgccgcggcgcgcggc
atcggcctgtcgaagctgatctccacgagcaacgaggtcgacctggaactggccgacttc
atcgaccatctggccgacgaccccgccaccaaggtgattgcgctgtacgtcgaaaccgtg
cgcgaccccgcgaagttccgtgcggcctgcctgaaggccgcacgcctgggcaagccggtc
gttgccttcaagatcggccgctcggaggcgggcgcgaaggccgccgtgtcgcacaccggt
gccatggcgggtgccgacagcgtgtacgacgcgctgttcaggcaggtcggcgtgatccgg
gcgcagagtttctcggatctgctggacattcccgtggcgctgtccacgggccgcaggctg
cgcggcgggcgcgtcgccatcctcacctccacgggcggcgccggcacgctggtgtcggac
gacctgggcgtggcgggcttcgatacgcccgcgcccgacgaggccaccgccaatgcactg
cgcgcgctgcagagcggcagcgaggccgtgctcgaccgcaaccccatcgacgtgacgctc
gcgggcctgcgccccgacctgctgcgcggcgccatcaacgcgctgctggcgagcccgagc
tacgacgcgctggtgatcatcgtcggctcctccagcctggccatgcccgagctgctggcc
ggcgccatccaggaatgcctgccgaactccgacaagccggtgatggcctacgtgagcccg
catgcgcccgaagtgggcgcactgctcacgcggcgcggcgtgccggccttcaccgccgcc
gagagctgcaccgccgcgctggccggcatgctgcgcgtgcagcgcttcatggcgcctgca
caagacgacgcggcgctgccgccggtcgaggcctgcgactttccctccggctcgctcgac
gaggcaaaggccaagcagctgttcgcgcgcttcggcgtgccctgcgcctcggaacgcgtg
gtcgcttcgccggccgaggccgaagccgccgcgcgcgagctgggtgggcgcgtcgtgctc
aagatcctgtcgtccgagatcacgcacaagagcgacgtgggcggcgttgcggtcggcttg
gacggcgacaccatcggcgagcgcatcggccgcatggcggccgaggtgaaggcccgcacc
ggcgtgcatccgcagcactttctcgtgcaggagatggttgcgggcggcacggagctgatc
ctgggcatgcaccgcgatgcgctgggcacggccatcctgctgggcatgggcggcgtgacg
gcggagctcttcaaggacacctccatgcggctgctcgcgcaggacgcacagggcctgaag
ccgctcggccggaccgaggcgctgtccatggcgcgcgatctcaagacctggccgctgctg
gacgggttccgtgggcggcccaaggccgacgtcgaggccttggtcgacgcgatcgtcgct
ttctcgaggatggcggcgcagcttggcgagcgcctggtcgaggccgagatcaatcccgtc
ttcgtgctgccgcaggggcagggcgtgcgcgccgccgacggcgtcgtcgtgctggcctga
DBGET
integrated database retrieval system