KEGG   Variovorax sp. PMC12: C4F17_28615
Entry
C4F17_28615       CDS       T05380                                 
Name
(GenBank) 6-carboxyhexanoate--CoA ligase
  KO
K24012  acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00010  Glycolysis / Gluconeogenesis
vam00620  Pyruvate metabolism
vam00640  Propanoate metabolism
vam01100  Metabolic pathways
vam01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:vam00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    C4F17_28615
   00620 Pyruvate metabolism
    C4F17_28615
   00640 Propanoate metabolism
    C4F17_28615
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:vam01004]
    C4F17_28615
Enzymes [BR:vam01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.13  acetate---CoA ligase (ADP-forming)
     C4F17_28615
Lipid biosynthesis proteins [BR:vam01004]
 Acyl-CoA synthetase
  Short/medium chain acyl-CoA synthetase
   C4F17_28615
SSDB
Motif
Pfam: ATP-grasp_5 Succ_CoA_lig CoA_binding_2 CoA_binding ATP-grasp_2
Other DBs
NCBI-ProteinID: AVQ85025
UniProt: A0A2P1VIL9
LinkDB
Position
2:complement(246200..248299)
AA seq 699 aa
MNDAIAKLLSPRSVAVIGASADPKKTTGRPVAYLQKHGFSGRILPVNPKVERIGELPCYP
DIASLPEVPDVAVVLLGAERAHLAVKELSQRGCAAAIVLASGYTETGEEGARRQQQLVEA
AGTMRILGPNTIGLVNLTDNIVLSPSGALEMDEFQAGGIGVVSQSGGILGSLLSRAAARG
IGLSKLISTSNEVDLELADFIDHLADDPATKVIALYVETVRDPAKFRAACLKAARLGKPV
VAFKIGRSEAGAKAAVSHTGAMAGADSVYDALFRQVGVIRAQSFSDLLDIPVALSTGRRL
RGGRVAILTSTGGAGTLVSDDLGVAGFDTPAPDEATANALRALQSGSEAVLDRNPIDVTL
AGLRPDLLRGAINALLASPSYDALVIIVGSSSLAMPELLAGAIQECLPNSDKPVMAYVSP
HAPEVGALLTRRGVPAFTAAESCTAALAGMLRVQRFMAPAQDDAALPPVEACDFPSGSLD
EAKAKQLFARFGVPCASERVVASPAEAEAAARELGGRVVLKILSSEITHKSDVGGVAVGL
DGDTIGERIGRMAAEVKARTGVHPQHFLVQEMVAGGTELILGMHRDALGTAILLGMGGVT
AELFKDTSMRLLAQDAQGLKPLGRTEALSMARDLKTWPLLDGFRGRPKADVEALVDAIVA
FSRMAAQLGERLVEAEINPVFVLPQGQGVRAADGVVVLA
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgaacgacgccatcgccaagctgctgtcgccacgcagcgtcgccgtcatcggtgcctcg
gcagacccgaagaaaaccaccggccggcccgtcgcctacctgcagaagcacggcttctcc
gggcgcatcctgccggtgaacccgaaggtcgagcgcatcggcgagctgccgtgctacccc
gacatcgcctcgctgcccgaagtgcccgacgtcgccgtcgtgctgttgggcgccgagcgt
gcgcacctggccgtgaaggagctgtcgcagcgcggttgcgccgccgccatcgtgctggcc
agcggctacaccgaaaccggcgaggagggtgcgcggcgccagcagcagctggtggaggca
gcagggacgatgcgcatcctgggccccaacaccatcgggctcgtcaacctcacggacaac
atcgtcctgtcgccgtccggtgcgctggagatggacgagttccaggccggcggcatcggc
gtggtctcgcagagcgggggcatcctgggctcgctgctgtcgcgcgccgcggcgcgcggc
atcggcctgtcgaagctgatctccacgagcaacgaggtcgacctggaactggccgacttc
atcgaccatctggccgacgaccccgccaccaaggtgattgcgctgtacgtcgaaaccgtg
cgcgaccccgcgaagttccgtgcggcctgcctgaaggccgcacgcctgggcaagccggtc
gttgccttcaagatcggccgctcggaggcgggcgcgaaggccgccgtgtcgcacaccggt
gccatggcgggtgccgacagcgtgtacgacgcgctgttcaggcaggtcggcgtgatccgg
gcgcagagtttctcggatctgctggacattcccgtggcgctgtccacgggccgcaggctg
cgcggcgggcgcgtcgccatcctcacctccacgggcggcgccggcacgctggtgtcggac
gacctgggcgtggcgggcttcgatacgcccgcgcccgacgaggccaccgccaatgcactg
cgcgcgctgcagagcggcagcgaggccgtgctcgaccgcaaccccatcgacgtgacgctc
gcgggcctgcgccccgacctgctgcgcggcgccatcaacgcgctgctggcgagcccgagc
tacgacgcgctggtgatcatcgtcggctcctccagcctggccatgcccgagctgctggcc
ggcgccatccaggaatgcctgccgaactccgacaagccggtgatggcctacgtgagcccg
catgcgcccgaagtgggcgcactgctcacgcggcgcggcgtgccggccttcaccgccgcc
gagagctgcaccgccgcgctggccggcatgctgcgcgtgcagcgcttcatggcgcctgca
caagacgacgcggcgctgccgccggtcgaggcctgcgactttccctccggctcgctcgac
gaggcaaaggccaagcagctgttcgcgcgcttcggcgtgccctgcgcctcggaacgcgtg
gtcgcttcgccggccgaggccgaagccgccgcgcgcgagctgggtgggcgcgtcgtgctc
aagatcctgtcgtccgagatcacgcacaagagcgacgtgggcggcgttgcggtcggcttg
gacggcgacaccatcggcgagcgcatcggccgcatggcggccgaggtgaaggcccgcacc
ggcgtgcatccgcagcactttctcgtgcaggagatggttgcgggcggcacggagctgatc
ctgggcatgcaccgcgatgcgctgggcacggccatcctgctgggcatgggcggcgtgacg
gcggagctcttcaaggacacctccatgcggctgctcgcgcaggacgcacagggcctgaag
ccgctcggccggaccgaggcgctgtccatggcgcgcgatctcaagacctggccgctgctg
gacgggttccgtgggcggcccaaggccgacgtcgaggccttggtcgacgcgatcgtcgct
ttctcgaggatggcggcgcagcttggcgagcgcctggtcgaggccgagatcaatcccgtc
ttcgtgctgccgcaggggcagggcgtgcgcgccgccgacggcgtcgtcgtgctggcctga

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