Vagococcus zengguangii: FA707_03950
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Entry
FA707_03950 CDS
T05965
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vao
Vagococcus zengguangii
Pathway
vao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FA707_03950 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vao03019
]
FA707_03950 (rnr)
03016 Transfer RNA biogenesis [BR:
vao03016
]
FA707_03950 (rnr)
Enzymes [BR:
vao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FA707_03950 (rnr)
Messenger RNA biogenesis [BR:
vao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FA707_03950 (rnr)
Transfer RNA biogenesis [BR:
vao03016
]
Prokaryotic type
tRNA degradation factors
FA707_03950 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
GH97_N
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
QCI86165
UniProt:
A0A4D7CPU0
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All DBs
Position
828130..830514
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AA seq
794 aa
AA seq
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MKQTIRERIISFMEESDKSSFSIQEIATGLDLEQSQNFKLLVQTIASMERDQQVEFTSKG
KIKLPMELTIEGTFRANDRGFGFVTISPEEPDVYIAKELTGFALNGDKVKLDIIKPGNPI
DNQAAEGRIVEVVERAMTQIVGEFVAYDEELIEETGLYGYISPKSKLMSQYKVYIAANGI
HPEDGEICIVEITHYPEKGYEKQIEGIVKQTIGHKNEPGMDILTIAMQHGILTQFSSDTL
AQAETIPEEVPEADIEGRVDLRDELIITIDGADAKDLDDAVQVKKLSNGNYQLGVYIADV
SHYVTEGSPLDIEAQERGTSVYLTDRVIPMLPTRLSNGICSLNPKVNRLTMSCRMEIDET
GHVVDYEIFESVIKTTERMTYSDVNHLMDKDDEVLLEKYQHLFPMVDEMTELHYILEKMR
HDRGAISFEDKESKIYLDNEGNPIEIVLRERGTAERMIESFMLAANETIARHFHEKMLPF
IYRIHEHPKESKIQTFFEFISNFGVSVKGVKDDIEPRELQKVLEQANDLPEKPIISMMLL
RSMQQAKYSENSLGHYGLAATYYTHFTSPIRRYPDLLVHRLIKEYVKENPVSEKRKAKWE
QAIPDIALHSSQMERRAVEAERETDAMKKAQYMEQFVGETFPGVISSVTKFGVFVELPNT
VEGLIHINQLKDDYYQFVESHLALVGERTRKIYKIGQQVVVKVVKVDVDNREIDFEILSA
EVIDDEALTVRQSNRERKAKRNERRNERSPKQSQKASFDKEKNGSTKKKGKKKPAPFYSK
VAKGKKKKKQSHKK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaacaattagagaaagaattatttcttttatggaagaatcggataagagcagt
ttttctattcaagaaatcgcaactggactagatttagaacaaagtcaaaattttaagtta
ttagttcaaacaattgccagtatggaacgcgatcaacaggtcgagtttactagtaaaggt
aaaatcaagctgccgatggaattaacaattgaagggacgtttcgtgctaatgaccgtggt
tttggtttcgtgacgatttcaccagaagagccagatgtttatattgctaaagaattaaca
ggatttgctttgaatggtgataaagtcaaacttgacattattaaaccagggaatccgata
gacaatcaagcagcagaaggtcgcatcgttgaagttgtggaacgtgccatgactcaaatt
gtaggtgaatttgttgcttatgatgaagagttaatagaagaaacaggtctttatggttat
atttcacctaaaagtaaattaatgagtcaatataaagtttatatcgccgcaaatggtatt
catcctgaagatggcgaaatttgcattgttgaaattactcattacccggaaaaaggatac
gagaagcaaattgaagggattgtcaaacaaacaatcggacataaaaatgagcctgggatg
gatatattaacgattgcgatgcaacatggtattttaactcagttttcttcggacacacta
gcacaagctgaaacaataccagaagaagtacccgaagcagacatagaaggtagagttgac
ttacgtgatgaattaattatcacgatagatggagcagatgctaaagatttagacgacgcc
gttcaagtgaaaaaattaagtaacggcaattatcaattaggcgtctatattgcggatgtt
tctcattatgtaacagaaggctcacctttagatatcgaagcgcaagaacgtggtacaagt
gtttatttaacagatcgagtaattccgatgttgccaacgcgtttgtcgaatggaatttgt
tcgttaaatccaaaagttaatcgtctaacgatgagttgccgtatggaaatcgatgaaacg
gggcatgtcgttgattatgaaatttttgaaagtgtcatcaaaacaacagaacgtatgact
tattctgatgttaatcatttaatggataaagatgatgaggttcttttagaaaaataccag
cacttattcccaatggtcgatgaaatgactgagttacattatattttagaaaaaatgcgt
catgaccgtggggcaatctcatttgaagataaagaatcaaaaatttatttagacaacgaa
ggtaacccaattgaaattgtgttgagagaacgtggaacagcggaacgtatgattgaatca
ttcatgttagcagccaatgaaacaatcgctcgtcattttcatgaaaagatgttaccattt
atttatcggattcatgaacatccaaaagaatcgaaaatccaaacattctttgaatttatt
agtaattttggtgtgtccgtcaagggtgttaaagatgatattgaacctagagaattacaa
aaagttttagaacaagcgaacgatttgcctgaaaaacccattattagcatgatgttactt
agaagtatgcaacaggcaaaatatagtgagaattcactaggacactatggattagctgca
acttattatacacacttcacatcacccattagacgttatcctgatttattagttcatcgt
ttaattaaggaatatgtgaaagaaaatccagtttctgagaaacgtaaagctaaatgggag
caagcaattcctgatattgcgctacactcatcacaaatggaacgtcgagcagttgaagca
gagcgagaaacagatgccatgaagaaagcacaatatatggaacaatttgttggcgaaact
ttcccaggtgtcatcagctcagtgacgaagtttggtgtgtttgttgaattaccaaatacg
gttgaagggttaatacatattaatcaattaaaagatgactattatcaatttgttgagagt
catttagctttagtcggagaacgtacgcgtaaaatttataaaattgggcaacaagttgtg
gtaaaagttgtcaaagtagatgtagataatcgtgaaattgattttgaaatattatcagca
gaagtaattgacgatgaggcattgactgttcgtcaatcgaatcgtgaacgaaaagcaaaa
cgtaatgaacgacgcaatgaacgttcgcctaaacaatcgcagaaagcgtcgtttgataaa
gaaaaaaatggctcaactaagaaaaaaggtaaaaagaaacctgctcctttttatagtaaa
gtagctaaaggtaaaaagaagaaaaaacagagtcataaaaagtag
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