KEGG   Variovorax paradoxus S110: Vapar_0530
Entry
Vapar_0530        CDS       T00916                                 
Name
(GenBank) type VI secretion ATPase, ClpV1 family
  KO
K11907  type VI secretion system protein VasG
Organism
vap  Variovorax paradoxus S110
Pathway
vap03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vap00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Vapar_0530
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vap02044]
    Vapar_0530
Secretion system [BR:vap02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   Vapar_0530
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA ClpB_D2-small AAA_16 AAA_5 AAA_22 Sigma54_activat Zeta_toxin AAA_7 TniB AAA_14 ATPase_2 NACHT nSTAND3 AAA_18 TsaE Cyclin_N DUF815 Clp_N CbiA AAA_19 Hpr_kinase_C HerA_C Torsin SRP54 T2SSE MlrC_C
Other DBs
NCBI-ProteinID: ACS17193
UniProt: C5CK95
LinkDB
Position
1:584776..587505
AA seq 909 aa
MSEISRTALFGKLNSLAYKAIEGATVFCKMRGNPYVELEHWFAQLLQAQDSDLHRVIQHY
GLDVSVIAKDMTAALDRLPRGATAISDFSPHIENAIERAWTYATLQFGEAQVRTGYILVG
MLKTQSLRNPLFGLSKQFEKVKVEDLADNFAKICDASPESQMRAQDGTGMGSGAPGEDSG
AMAPAAMGKGDALKKFAVDLTEKAKKGEMDPITGRDEEIRQIVDILMRRRQNNPLLTGEA
GVGKTAVVEGFAQRLARGDVPPQLKDVKLLTLDIGLLQAGASMKGEFEQRLRQVIDEVQA
SPTPIILFIDEIHTLVGAGGAAGTGDAANLLKPALARGNLRTIGATTWAEYKKYIEKDPA
LTRRFQVVQVPEPDEVKAILMLRGVASVLEKHHRVQLLDEAIEAAVKLSHRYIPARQLPD
KAVSLLDTACARVAVSQHATPPEVEDCMRRIEGLTVEQEIIGREEAIGIDVTKRAAQVSA
LLLESNGQLETLSARWKEEKGLVDRLLELRSKLRAGSKPVDTASAEGDAKADVPPPQPSP
GGGGSEDRAALLEELHALQAKIHAVQGESPLILPSVDEQAVASVVADWTGIPVGRMVKNE
VEAVLKLADTLNQRVIGQKHGLEMIARRIQTSRARLDNPQKPIGVFMLCGTSGVGKTETA
LALAEALYGGEQNIITINMSEFQEAHTVSTLKGAPPGYVGYGEGGILTEAVRRRPYSVVL
LDEVEKAHPDVHEIFFQVFDKGWMEDGEGRMIDFKNTIILLTTNAGSELVMSMCRDPELL
PDSNALADALKAPLMKVFPPALLGRIVTIPYYPLSPDMMKKIVRLQLGRIKKRVETNHGV
PFEYSDAVVDQVVARCQDPESGGRVIDAILTNTVLPTISVEYLQRLASGGEIRRVALDVK
DADFTYAFD
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgagtgaaatcagtcgcaccgcccttttcggcaaactcaactcgctggcctacaaggcc
atcgagggcgccacggtgttctgcaagatgcggggcaatccgtatgtggaactggagcac
tggttcgcccagctgctgcaggcgcaggactccgacctgcaccgcgtgatccagcactac
ggcctcgacgtgtcggtcatcgccaaggacatgacggccgcgctcgaccgcctgccgcgc
ggcgccaccgccatcagcgatttttccccgcacatcgagaacgccatcgagcgcgcctgg
acctacgccaccctgcagttcggcgaagcgcaggtgcgcaccggctacatcctggtgggc
atgctcaagacgcagagcctgcgcaacccgctgttcggtttgtcgaagcagttcgagaag
gtcaaggtcgaggacctggccgacaacttcgcgaagatctgcgacgcctcgcccgaatcg
cagatgcgcgcgcaggacggcaccggcatgggcagcggcgcgcccggcgaagactcgggc
gcgatggcgcccgccgccatgggcaagggcgacgcgctcaagaagttcgcggtcgacctc
accgagaaggccaagaagggcgagatggacccgatcaccggacgcgacgaggagatccgc
cagatcgtcgacatcctgatgcgccgccgccagaacaacccgctgctcacgggcgaggcg
ggcgttggcaagaccgcggtggtcgaaggcttcgcgcagcgcctcgcgcgcggcgacgtg
ccgccgcagctcaaggacgtgaagctgctcacgctcgacatcggcctcttgcaggccggc
gccagcatgaagggcgagttcgagcagcggctgcgccaggtgatcgacgaggtgcaggca
tcgcccacgcccatcattcttttcatcgacgagatccacacgctggtgggcgcgggcggc
gcggccggcaccggcgatgcggccaacctgctgaagcccgcattggcgcgcggcaacctg
cgcaccatcggcgccaccacctgggccgagtacaagaagtacatcgagaaagacccggcg
ctgacgcggcgcttccaggtggtgcaggtgcccgagcccgacgaggtgaaggccatcttg
atgctgcgcggcgtggccagcgtgctcgagaagcaccaccgcgtgcagctgctcgacgag
gccatcgaggcggccgtgaagctgagccaccgctacattcccgcgcgccaattgcccgac
aaggccgtgagcctgctcgacacggcatgcgcgcgcgtggctgtgagtcagcacgcgacg
ccgcctgaagttgaagactgcatgcgccgcatcgagggactcacggtcgagcaggagatc
atcggccgcgaggaagccatcggcatcgacgtgaccaagcgcgcggcgcaggtctccgcg
ctgctgctggaatcgaacgggcagctggaaacgctcagcgcccgctggaaggaagagaag
gggctggtcgatcggttgctggaattgcgcagcaaattgcgtgcggggagcaagccggtg
gacactgcttccgccgagggcgatgcgaaagccgacgtgcccccaccccagccctccccc
ggcgggggagggagcgaagaccgggctgcgctgcttgaagaactgcatgcgctgcaggcc
aagatccatgcggtgcaaggcgagtcgccactgatcctgccttcggtcgatgagcaggcc
gtggcctcggtggtggccgactggaccggcattcccgtcggccgcatggtcaagaacgaa
gtggaggcggtgctcaagctcgccgacacgctcaaccagcgcgtcatcggccagaagcac
ggcctggagatgatcgcgcggcgcatccagacgtctcgcgcgcggctggacaacccgcaa
aagccgatcggcgtcttcatgctctgcggcacctcgggcgtgggcaagaccgagaccgca
ctggcactggccgaggcgctgtacggcggcgagcagaacatcatcaccatcaacatgagc
gagttccaggaggcgcacacggtctccacgctcaagggcgcgccgcccggctacgtgggc
tacggcgagggcggcatcctgaccgaggcggtgcgccgccggccctacagcgtggtgctg
ctcgacgaggtcgagaaggcccaccccgacgtgcacgagatcttcttccaggtgttcgac
aagggctggatggaagacggcgagggccgcatgatcgatttcaagaacacgatcatcctg
ctcaccaccaacgccggcagcgagctggtgatgagcatgtgccgcgaccccgagctgctg
cccgattccaacgcgctggccgatgcgctgaaagcgccgctcatgaaggtgttcccgccc
gcgctcctgggccgcatcgtcaccattccctactacccgctgtcgccggacatgatgaag
aagatcgtgcggctgcagctgggccgcatcaagaagcgcgtggagaccaaccacggcgtg
cccttcgagtacagcgacgcggtggtcgaccaggtggttgcgcgctgccaggacccggag
tcgggcgggcgcgtgatcgacgcgatcctgaccaacacggtgctgccaacgatttctgtc
gagtacctgcagcggctggcctcgggcggcgagatccgccgcgtcgcgctcgatgtgaag
gacgccgacttcacctacgcgttcgactga

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