Varibaculum cambriense: CYK25_004775
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Entry
CYK25_004775 CDS
T09090
Name
(GenBank) transcription antitermination factor NusB
KO
K03500
16S rRNA (cytosine967-C5)-methyltransferase [EC:
2.1.1.176
]
Organism
vcb
Varibaculum cambriense
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vcb03009
]
CYK25_004775
Enzymes [BR:
vcb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.176 16S rRNA (cytosine967-C5)-methyltransferase
CYK25_004775
Ribosome biogenesis [BR:
vcb03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
CYK25_004775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusB
Motif
Other DBs
NCBI-ProteinID:
WIK89475
LinkDB
All DBs
Position
complement(1033544..1034512)
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AA seq
322 aa
AA seq
DB search
MRPDRSSKKYSAGNSSRDNRSRRRGENRSPQQEWRPQTDRVRTLVFQVLLAVETKDAYAN
LLLPPRLTRAHIGGRDAGFATELTYGTLRSQGYYDWIIDECSTRPVAALEKEVLIILRMG
LHQLLNMRVATHAAVSESVNLTKQEANEGAAGLVNGVLRQAVRLADSGELASRLGALSKS
RRLAIEYSHPAWIIAAYRAALSEQAKLGAQIPSDDDSLAALLAENNRAPYINLVARPGLV
DREELADAVEDMGQDVAYSTLSPWGLIVSGGDPANLEAVGSARAGVEDQGSQLVAGLAAT
YPLEGSDLKWLDLCAGPGGKRR
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
gtgcggccagatcgttcctcgaaaaaatattccgccggtaactcttcccgggataaccgg
agcagaaggcggggagaaaatcgttccccacagcaggaatggcgtccccaaaccgatcgg
gtacgcaccctggttttccaggtgctcctagcagtagagaccaaggacgcatatgcgaac
ctcctgctaccacccaggcttacccgcgcccatatcgggggacgagatgctggtttcgct
accgagctaacatacggcacgcttagaagccaaggctactacgactggataatcgatgag
tgttctactcgcccggtagcagccttggaaaaagaagtgctgattattttgcgaatgggc
ctgcatcaactgttaaatatgcgggttgccacccacgccgcggtcagcgaatcggtgaat
ctcaccaaacaggaagctaacgagggagccgcggggctggtaaacggggttttgcgccaa
gcggtgcgcctggcagacagcggggaactagcttcccggctgggagcactgagtaaatcc
cgccgcctggcaattgaatattcccatcccgcttggattattgctgcctaccgtgcggct
ttaagtgaacaagcaaaactgggtgcccagattcccagtgatgatgattcactcgcggct
ttgctggcagaaaataatcgcgcgccctatatcaacctggtggcgcgacccggtttggtg
gatcgggaagaacttgccgatgccgtcgaagatatgggacaagatgttgcctattcgacg
ctgagcccttggggtttgattgtgtctgggggagaccccgccaatctggaagcggtcgga
agcgcgcgcgcaggagtagaagatcaaggatcgcaactggtagccggactggcagctact
tatcccttagaaggttccgacctaaagtggctagatttatgtgctggtcccgggggaaag
cggcgttaa
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