Vibrio cholerae O1 LMA3984-4: VCLMA_A1080
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Entry
VCLMA_A1080 CDS
T01871
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VCLMA_A1080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcl03400
]
VCLMA_A1080
Enzymes [BR:
vcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VCLMA_A1080
DNA repair and recombination proteins [BR:
vcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VCLMA_A1080
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCLMA_A1080
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VCLMA_A1080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEA78333
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All DBs
Position
I:complement(1209293..1210717)
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AA seq
474 aa
AA seq
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MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE
AALITGITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLV
HLNKCPILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQES
DVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTD
AEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagaacaccagcccacattcttcttctttgactacgagacttggggagtcaat
cccgccaaagatcgtcctagtcagtttgcgggtgtgcgtaccgatatggacttcaacatc
atcggcgagcctttggtaatttactgtcagctgcccaacgactatttgcccgcccctgag
gccgcattgatcacagggatcactcctcaaaaagccaatagccaaggtctcgcggagccc
gaatttatcgcgcgtattcatgctgagctctccacacccaataccatcagcctaggctat
aacagcatacgttttgatgatgaagtgacgcgctacacctgctatcgcaactttatcgac
ccctatgcttggagctggcaacacggcaattcccgttgggatctgctggatgtgcttcgc
gcgtgtcatgctttgcgtccggaaggtattgagtggccggaaaatgatgacggctttact
agctttaaactggaacatctttctgttgccaacggcattgagcacagcaacgcgcacgat
gctatggctgatgtgattgccaccattgaactggcgaaaaaagtcaaagccgcgcagccg
aaattgttcgactacttcttcactatgcgccacaaacgcaagctgacagaactgattgat
attgtgaaccaaactcctctgatgcatgtttctggcatgcttgggcgtgagcgccactac
accagctggattgtgccgattgcttggcatccgaccaatcaaaatgcggtgattgtggtg
gatttgggtaaagaccctcagccgctgctggagctcgatgccgaaacgctgcaagcacgt
ctctatacgcggtatgaagacctagcaccggatgagctaccagtacccgtgaaattggtg
catctcaataaatgccctattctggctccggccaaaaccttgaccgcagaaaatgcacaa
aagattggtattgaccgcgaacagtgtctcgcgcacttgaatgtgattcgtcaacatccc
gaggttcgtgaaaagctggtgacggtatttagccaagagcgcgaatttaaccaagagagt
gatgtggatagccaactctatgccggttttttctccccagccgatcgcgcggcgatggag
atcatccgcaccactgcaccggagaatctgggcagcttagcgatacaggtggcagataag
cgcattgaaccgctgctgtttcgttatcgtgcgcgccattatccccataccttaaccgat
gccgagcaacgccgctgggcagcgcattgccgtgactatttcgagcgcaatctagaaggt
tatatgttgaatttggaaaatctggtgcatgaacatcaagctgatccaaagaaaatggcg
attttaaaatccgtctaccattacgtggaaaaactcgcttgctaa
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