Vibrio cholerae O1 LMA3984-4: VCLMA_A2035
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Entry
VCLMA_A2035 CDS
T01871
Name
(GenBank) Exodeoxyribonuclease V alpha chain RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VCLMA_A2035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcl03400
]
VCLMA_A2035
Enzymes [BR:
vcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VCLMA_A2035
DNA repair and recombination proteins [BR:
vcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VCLMA_A2035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_22
nSTAND3
AAA_16
DEAD
AAA_28
UvrD_C
TrwB_AAD_bind
T2SSE
NTPase_1
MukB
AAA
ResIII
CbiA
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEA79233
LinkDB
All DBs
Position
I:complement(2301794..2303914)
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AA seq
706 aa
AA seq
DB search
MMFWDSEVAKRLLAQGALRPLDVQFARFIGKQAALAGHNAAESELLSVLSAALSAELGRG
HICLPLWDAQGNRCDLAALIGLYGEASLQHSERWLALDWQALLQASPLVGKQGEAVPLMF
DGARLYLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQALQQK
PLSSVERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQKVA
AAVALTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAARLTES
MGKAVSQLAIEPEIAAAIPSTSSTIHRLLGAIPGSAEFRHHARNPLHLDLLVVDEASMVD
LPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQGYGNEQGAQLAELTGF
ASLRQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVETVWQQSFSDIE
HFALSGEHYQQLLQTLVQAYRPYLNLLNQSTEQFESTKQTMLTLAKSALDAFSRCRLLCA
LREGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGRPIMVTCNDHGLGLYNGDIGLCMRD
RDDDQGRLKVYFELPDGSIEAVLPSRVPQHETAYAMTIHKSQGSEFDLTLLILPPDYSPI
LTRELVYTGITRAKKQLKLYCDNKVLQRAIKVKTQRASGLVARLEQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgatgttttgggatagtgaagtagcgaaacgtctgctggcacaaggcgcgctgcgtcct
ttggatgtgcagtttgcccgctttattggcaagcaagccgcattggcagggcacaacgct
gcagaaagtgaactgttgagtgtgctgagcgcggcgctcagtgcagaacttgggcgtgga
cacatctgtttgccactgtgggatgcacagggtaatcgctgcgatctggcggcgctgatt
ggtctttatggtgaagcgagtttgcagcacagtgaacgctggttagcgttagactggcaa
gccttactgcaagcctcgccgttggtggggaagcaaggtgaagcggtgccgttaatgttt
gatggcgcaaggctctatctgcatcgctactggcattatgaaaagcaactggcagcgcga
ttgactgagttggccgcaccccaacgtttaagccctgctgaactggctaacttgcgtgaa
cgcctgaataccttatttgcccgcgactatttaggcttgtggcaagcactacaacaaaag
ccgctgagttcggtcgagcggattcaactgctgaatgatcgattggatgtggtggagtcg
gatgcgctggattggccagcgattgaagctgtagtcgaaaaagcgcagcgtgccgcggat
ttgcaagctttagagcagcttattccgcttactcactgcttaaactggcaaaaagtggcg
gctgccgtcgcgctcacgcgccgttttgcggtgatttccggtgggccgggaaccggcaaa
accaccacagtgaccaagcttctggcggcgctgattagccaaagcatggcgcaaggtaaa
gtgccagagatcaaattgattgctccaaccggtaaagccgcggcacgcttaaccgaatcg
atgggtaaagcggtgagtcagctggcgatagagcctgagatcgccgcggcgatcccaagc
acttccagtaccattcaccgtttgcttggcgcgattccgggcagcgctgagtttcgtcat
catgcacgtaatccactccatcttgatctgttggtggtggatgaagcgtccatggtcgat
ctgcctttgatggtgaaactggtcgaagcgctgcccaagcacgctcggttgattttactt
ggcgataaagatcagttggcctcggtagaagcgggggcggtgctcggtgatatttgtacc
ttcctgaaccaaggttacggtaatgagcagggcgcgcagttggctgaactgacggggttt
gcctctttgcgccaaactgccagtaagacggtgaatccggtggcggattgcttatgcatg
ctgcaaaaaagctaccgttttgatgcacgttctggcattggccaactggcgaaagcgatc
aacagtggatctccggcgcgcgttgaaactgtgtggcagcaatcgttcagcgatattgaa
cattttgcccttagtggcgagcattatcagcaactgctgcaaaccttagtgcaggcttat
cgtccttatctgaatttgctcaatcaatcgactgagcagtttgagtcgacaaagcaaacc
atgctcacactagccaaatcagcactcgatgcgtttagtcgctgccgattattgtgcgcg
ttacgtgaaggcgattttggggtgatggggctgaacactcgcatcgaacgggcgttgaat
gcgcacaagctgattaaaactcaagaagagatctggtatcacgggcgaccgatcatggtc
acgtgtaacgatcatggcttggggctatacaatggtgatatcggtttgtgtatgcgcgat
cgtgacgatgatcagggcagactgaaagtctattttgagctgccggatggcagcattgaa
gccgtgttaccgagccgagtcccgcaacatgaaaccgcgtatgcgatgaccatacataaa
tcgcaaggcagcgaatttgatttaactttgctgattttaccgccggattacagtccgatt
ctgacgcgtgagttagtttacacggggatcacaagggcgaaaaaacagctcaaattgtat
tgcgataacaaggtattgcagcgggcaattaaagtgaaaacccaacgggcgagtggctta
gtggcaaggttggagcagtaa
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