Vibrio cholerae O1 O395: VC395_A0110
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Entry
VC395_A0110 CDS
T02099
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
vcr
Vibrio cholerae O1 O395
Brite
KEGG Orthology (KO) [BR:
vcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vcr03000
]
VC395_A0110
Transcription factors [BR:
vcr03000
]
Prokaryotic type
Helix-turn-helix
Other families
VC395_A0110
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
HTH_8
Mg_chelatase
AAA_2
AAA_16
AAA
DUF2381
Motif
Other DBs
NCBI-ProteinID:
ACP10955
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Position
II:128812..130404
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AA seq
530 aa
AA seq
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MSQWLAFATQLVGVRKSHQLALQFVDLLTQGLDLSDSLLLLPSSDGRLLVPHDPQRQFAW
SVTDFDVPFAHVLQSSNAMHLTAEELVFWQSNRTFSQLTSRVGMFDSVWIQPLPMDTRQV
HSILLLMGESHGIVSAFENADFLKFIEVFSQQWSLLNDMEREEQRRLELKQSLTDIERDS
AQRSLANALSRTLIGESAAMQKLREQIVSAANSQLSVMVQGETGTGKELVAAAVHELSSR
KSAPFVAINCAAIPEHLLESELFGYCKGAFSGADSDKQGLIAQANGGTLFLDEIGDMPLT
LQAKLLRVLESRTFRPLGGKQELSSDFRLVSATHVNLLDQVRKKEFRQDLYYRLFQYPIT
LPRLAARLEDIELLSEHFVRVFNLQHNTRIRGLNYRAIDCLKQYDFPGNVRELKHLIEFG
CAQTADGTQVEASCFAHRLQTLPCLAPEATPVAVSVETENVDLEPSVALAGEPNFAVIHD
LKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKTP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatggctggcgtttgcaacccaattggtgggagtaaggaagtcccaccagctt
gcgctgcaatttgttgatctgctgactcaaggcttagatctgagtgatagccttttgttg
ttgccatcgtcggatgggcgtttacttgtgcctcatgatccacagcgtcagttcgcgtgg
tcagtgacggattttgatgtgccttttgcccatgttttgcagtcatccaatgcgatgcat
ttgaccgcggaagagttggtattttggcaatccaatcgcacttttagccagttaacctct
cgcgtggggatgtttgattcggtatggatccaacccctgccgatggatactcgtcaagta
cactcgatcttgctgttgatgggcgagagtcacggtatcgtgagcgcttttgaaaacgcg
gactttttgaagtttatcgaggttttttcccagcaatggtcactgctcaacgatatggaa
cgtgaagagcagcgccgcttggagctgaaacaatcgctgacggatattgaacgcgactcg
gcgcagcgctcactggccaatgcgttatcgcgtactttgattggtgaaagcgctgcgatg
caaaagctgcgtgagcagattgtctctgccgctaactctcagctctcggtcatggtgcaa
ggtgaaactggcacggggaaagagttagtcgccgcggccgtgcatgaactttcgtcacgt
aagtctgcgccgtttgttgcgatcaactgtgcggcgatccctgagcatctactggaaagt
gaactgtttggttactgcaaaggggcattttctggagcggacagcgataaacagggactt
atcgcacaagcgaatggtggcacgctatttctggatgagatcggcgatatgccgctcacc
ttacaagccaaattattgcgtgtgcttgaatcgcgtacttttcgaccgctcggtggtaag
caggagctcagttccgatttccgtctggtatctgccacacacgtcaatctgctggatcaa
gtacgcaaaaaagaatttcgccaagatctctattaccgtctattccagtatccgatcacc
ttgccgcgtttggcggcacgcttggaagatattgagctgctcagtgagcactttgtgcgc
gtgttcaacttgcaacataacacgcgcattcgtggtttgaactatcgagccatcgactgc
cttaagcagtacgacttcccgggaaatgtgcgtgagctgaaacatttgattgagtttggc
tgcgcgcaaacagcggatggtacgcaggtggaagctagttgctttgcccatcgtttacaa
accctaccctgtcttgcgcctgaagcgacgccggtagccgtttctgtcgaaactgagaac
gtggatcttgaaccctcggttgcgctggctggagaaccgaattttgcggttatccatgat
ttgaaacaggcggtcagtcagtttgaagcgttgatcatcagtgagcgtttgaaccgcttt
gctggcgatcgcgcgaaagcggcgaaaagtctcggtatccctaagcgtaccttggcctac
aagtgcctgaaattggagatcaaaaccccatga
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