Vibrio crassostreae: IS519_06885
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Entry
IS519_06885 CDS
T08776
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IS519_06885 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_06885 (recD)
Enzymes [BR:
vcra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IS519_06885 (recD)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IS519_06885 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
Helicase_RecD
RecD_N
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
DEAD
TrwB_AAD_bind
T2SSE
AAA_28
CbiA
ABC_transp_aux
PhoH
SRP54
RNA_helicase
AAA
NACHT
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UPR30991
LinkDB
All DBs
Position
1:complement(1520927..1523137)
Genome browser
AA seq
736 aa
AA seq
DB search
MTTTTTNTSIETANTTKPVSLIPEQLMDVLKFLADKGSIRQLDYQFARFIAQQATSYSQE
IGFLAGVVSHELGKGHICSQLIQQYTIGPAQTADLAQLLGLYGETALQLNQKLLGIDWLA
VLQSSNLVGATNDCVKPLMFDGQRVYLQRYWNYEVVLADTLNRLSKPVEFNIEQKKALTE
TLNQLFARSYHFLFNALAKAEASQKTSQVLRQQLVCDHLDIVNEQALDWGAIDQGIVQAK
QVTDLDVLDGLVPLSACLNWQKVAAAVALSRRFAVISGGPGTGKTTTVTKLLSAMVEQSL
SQGKTPTIKLVAPTGKAAARLTESIGKAIEQLPLAPEVKANIPTESSTLHRLLGAIPNRA
EFRHNRRNPLHLDILVVDEASMVDLSMMYKLVDALPEHARLILLGDKDQLASVEAGAVLG
DICSFNSAGYSSAQGNLIAEMTGFDAIAKTQQAKAGTVNPPAIADSLCMLQKSYRFDARS
GIGQLAKAINNGSANQVDQVFAKGFGDIENHPLSSDSYNLMLRTLVNEYGAYLNRMNVPL
EELETQEARAKSVLDLFSQCRLLCSIREGDFGVKGLNHRIERALAARRLVNPHNDELWYH
GRPVMVTRNDHGLGLYNGDIGICMLESDSNQPESTPRLKVYFELPDGSVKAVLPSRVPEH
ETAYAMTIHKSQGSEFDLTLMILPPDFSPILTRELIYTGITRAKKRLMMFSDTNVLKRGI
KVKTDRVSGLGSRLTS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacgaccactaataccagcatagaaacagcgaacacaacgaagccagtttca
cttattcctgagcaacttatggatgtactcaagtttcttgcagataagggttcgattcgt
cagttggattatcagtttgcccgttttattgctcagcaagccacgagttactctcaagaa
atcggttttctcgctggggtagtgagccatgaattaggcaaagggcacatttgttctcag
cttatacagcagtatacgataggccctgcacaaacggcagatctagcccagttacttggt
ttgtatggtgaaacggcgctgcaattgaatcaaaagctgttaggtattgattggttggcg
gtacttcaatcgtccaatttagttggagcaaccaatgactgtgttaagccgctgatgttt
gatggacagcgtgtctacttacagcgttactggaactacgaggttgtactggctgacacg
ttaaaccgtttaagtaagccagtagagttcaatattgagcagaaaaaggcgctgacggaa
acactcaatcagctctttgcacgcagctatcacttcctgtttaacgccttagccaaggct
gaagcaagccaaaaaacgtctcaggtgttacgccaacaattggtgtgtgatcatcttgat
attgtgaatgagcaggctctagattggggagcaatcgaccaagggattgtacaagctaag
caggtaacggacttagatgttctagacggtttggtaccgctatcggcatgtttgaactgg
caaaaagtggcggcagcggtcgcactgagtcgtcgttttgcggtgatttctggtggaccg
ggtaccggtaaaacgaccacagtaaccaaattactgtcggcgatggtcgagcaatcacta
agccaaggtaaaacgccaacgattaaactggtggcaccgacgggtaaagcagcggcgcgt
ttaaccgagtcgatcggtaaagcaattgaacagctgccattagcgcctgaagtgaaagct
aacataccaactgaatcgagcacgttacatcgattactcggcgcgattcctaaccgagct
gagtttaggcataaccgacgcaacccgctccatctagatatcttggtagtggatgaagct
tcgatggttgatctgtcgatgatgtataagctggtggatgcacttccggagcacgcaagg
cttatcttgttgggtgataaagaccaactcgcttcagtagaggcaggtgctgtgctcggt
gatatctgttcattcaactctgcagggtacagcagcgcgcaaggcaatttgattgcagag
atgacaggctttgatgcgatagcgaagacacaacaagcaaaagcaggaaccgttaatcca
ccggcaattgcagatagtctgtgtatgctgcagaagagttatcgtttcgacgcgcgttct
ggtatcgggcagttggcaaaagcaatcaataacgggtctgcgaatcaagtcgaccaagtg
tttgccaaaggatttggcgatattgaaaatcatcctctatcgagtgacagctacaacttg
atgctgcgtaccttggttaatgagtatggtgcttatctcaaccgaatgaatgtgccgtta
gaagaattagaaacccaagaagcgagagccaaatcggtactcgatttgttcagccaatgc
cgactgttgtgttctattcgtgaaggtgattttggtgttaaaggcctcaaccatcgtatt
gaaagagcgcttgctgcaagacgcttggtgaatccgcacaacgatgaactttggtatcac
gggcgaccagtaatggtaacgcgtaacgatcatggcttggggttatacaatggtgatatt
ggtatctgcatgcttgaatcggattcaaaccaacctgaatcaactcctcgtttgaaggtc
tattttgaactgcctgatggcagcgtgaaagctgtactaccaagccgagtgcctgagcat
gaaaccgcctatgcgatgacgatacacaaatctcaaggtagtgaatttgatctgactttg
atgatcttaccgccagatttcagcccaattctaacgcgagagcttatctatacgggtatt
acgcgtgccaagaaacgactgatgatgttcagtgataccaatgtattgaagcgtggtatt
aaggtgaaaacagatcgagtgagtggtttagggagtcgcttaaccagctaa
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