Vibrio cholerae O49 1154-74: VAA049_3364
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Entry
VAA049_3364 CDS
T03828
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VAA049_3364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcx03021
]
VAA049_3364
03400 DNA repair and recombination proteins [BR:
vcx03400
]
VAA049_3364
Enzymes [BR:
vcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VAA049_3364
Transcription machinery [BR:
vcx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VAA049_3364
DNA repair and recombination proteins [BR:
vcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VAA049_3364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKB03256
UniProt:
A0A0F0AYU6
LinkDB
All DBs
Position
complement(3701279..3705484)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgcgcacatctggttcctgaagtctctg
ccatctcgtatcggtctactgatggacatgcctctgcgtgacatcgaacgcgtactttac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtaccttgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgctgaagcgatcaaagatctgctggcatcgatggatctgcctgcagaagcagagcag
atgcgcgaagagctggataccactaactctgaaaccaaacgtaagaaactgactaagcgt
ctgaagctggttgaagcgttcgtcgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccattggttccactggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctaccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagccgctaagaaaatg
gttgagcgcgaagaagcggtcgtatgggatatcttggatgaagtgatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtt
ctgatcgaaggtaaagcgatccaactgcacccactagtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaatcatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaacgcg
aaaggcgaaggtatgtacctgactggtcctgctgaggctgagaaggcgtaccgtactaag
actgctgagctgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagctgaccactgaaaccaagatgattgacacgaccgttggccgtgccatgttatgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagttaggtaagaagcaa
atttctaacctgctcaacgaggcataccgtaagctgggtcttaaagacaccgttatcttc
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtatcggttggt
atcgacgatatggtagttccagcggctaagtacacggaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggtgaccgctggcgaacgctacaac
aaagtgatcgatatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgatcaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaacagcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacgttgtggtgactgaacatgactgtggcaccctagaaggcgtg
gtgatgacaccgcacatcgaaggtggtgacgttaaagtcgcactgactgaactggcactg
ggccgtgtggtatcagaagatatcctcaagccaggtacagatgaagtgttgatccctcgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactctgttgaccaaatc
aaagtacgttcagtggtaacttgtgattctgacttcggttgttgtgcgcagtgttacggc
cgtgacctagcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatcgcggca
cagtcaatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagctaagaacaacggttctgtgaaactg
cacaatgcgaagttcgtaaccaataaagatggcaagcttgttatcacctctcgtgcttct
gagctgaccatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaggctgatggtgatgcagtggctgcgggcgaaaccgtagcgaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgcgtacagtttgtggatatg
atcgatggcgtaaccgtttctcgtcaaacggacgatctgaccggtctgtcttcaagtgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagacatgcgtccagccattaaactg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgacatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggcgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtaccgtatcgttcggtaaagagaccaaaggtaagcgtcgtttgatcatcactcgtgac
agcggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacatcctg
cgtctgcgtggtatccatgcagtgaccacttacatcgcaaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacagttgag
tactcacaagtgaagatcgcgaaccgtaaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagttgttgggtattaccaaagcatctctggcgactgagtctttcatctct
gcagcatcgttccaagaaaccactcgcgttctaacggaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtgatcgttggccgtctgatcccggctggtaca
ggttttgcgtaccaccaagatcgtcaagccaaacgtgcacaagaacagcaaggtccatcg
gctgaacaagccactgacaacctcgctgcactgttgaatgcaggtttctcttctgacgac
gagtaa
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integrated database retrieval system
