Verminephrobacter eiseniae: Veis_4788
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Entry
Veis_4788 CDS
T00460
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Veis_4788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vei03019
]
Veis_4788
03009 Ribosome biogenesis [BR:
vei03009
]
Veis_4788
Enzymes [BR:
vei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Veis_4788
Messenger RNA biogenesis [BR:
vei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Veis_4788
Ribosome biogenesis [BR:
vei03009
]
Prokaryotic type
rRNA processing factors
Veis_4788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABM60480
UniProt:
A1WS73
LinkDB
All DBs
Position
5286500..5289616
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRIEPSLEACFVDY
GEDRHGFLPFKEIARSYFSPGAAPGQARINEVIKEGQELLVQIEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPGGMSIIARTAGIGRSAPELQ
WDLNYLLKLWNAIDGAAQSGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDAAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEDTATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LREALRQDRARVQFGTISKFGLMEMSRQRLKPALAEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIEFRQRVSVLMVPNKTLETPN
YRLERLKHDDPRLDHIEASYKLAEEVQDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPAPI
PAPAPAPAAQSRPESAALPPPGGQRPAAPAPVAGAAQEPGFLTWLKSVLGFGTAPAPTPA
AATTGRSEPRRDGRSAEGRGRRGERTPRDAEGRPSRDAEGRTPRDADNRAARNTNTARDA
EGAGREGRAVREGRNARDGGRGRRSAVPDGAPRQQTADASSDGSAAPVEGLNGQHIGNGA
PAQPQRGPRHERAERAERAERAERGERVEGRAERGAAAPEGAGAGRFPDTLPLAALPDLD
LSSSPVTLHGNDVDGTDGGAPGSEDPQRRERRSRDRYGRYRRDRRDRHEPGPRDAATDAE
ADAPAPMDADPAAAPAQDESPRRSYFSAATPAPASAAPVAPVPAPDEAVMAAPVTAVAAA
PALAEADIAVPVAPIAPIAPIAPIAPIAPVAPVAAVPVTPATPAATPVAHTLPRVQSFTL
PIDELQQVAATSGLQWVNSDADKIAAVQAAIAAEPAPIRVPRERMPVPEPDDGPLVLVET
RRDLSALTLPFEAQPPAA
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcagcccgaagaacggcgcctggccatcgtcgac
ggacaaaagctgctcgactacgaaatcgagatcgaggggcgcgaacagcgcaagggcaac
atctacaaagccgtggtcacgcgcatcgagccttcgctggaagcctgtttcgtcgactac
ggtgaagaccgccacggctttttgccgttcaaggagatagcgcgcagctacttcagcccc
ggcgccgcgcccggccaggcgcgcatcaacgaagtgatcaaggagggccaggaactgctg
gtgcagatcgaaaaggaagagcgcggcaacaagggcgcggcgctgaccacctttgtctcg
ctggccggccgttatgtggtgctgatgccgaacaacccccgtggcggcggcgtttcgcgc
cgcatcgagggtgaagaccgcgccgagctcaaggaggcgatggaccagctcgaatacccc
ggcggcatgagcatcatcgcgcgcaccgccggcattggccgcagcgcgcccgaattgcag
tgggacctgaactacctgctcaaattgtggaacgcgatcgacggcgcggcccagagcggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgcgatccgcgactac
ttcaacaacgacatcggcgacatcctcatcgacaccgacgacatctacgagcaggcgcag
cagttcatggcgcatgtgatgcccgagcatgccgcccgcgtcaagcgctaccgcgacgcg
gccgcgctgttcagccgctttcagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcaactgccctcggggggcgccatcgtgatcgaccacaccgaagcgctggtgtcggtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggacaccgccacccgcacc
aacctggaagccgccgacgaagtggcgcgccagatgcgcttgcgcgatttgggcggcctg
atcgtgatcgacttcatcgacatggaggaaagcaagaaccgccgcgaagtggaaaaccgc
ctgcgcgaggcattgcgccaagaccgcgcgcgcgtgcagttcggcaccatcagcaagttc
ggcctgatggagatgagccgccagcgcctgaagcccgcgctcgccgagggctcgtccatc
ccctgcccgcgctgcggcggctcgggccatatccgcgacaccgaatcttcggcgctgcaa
atcctgcgcatcatccaggaagaatcgatgaaggacaacaccgccgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctcaacgaaaagcgcaccgagatcgccaagatc
gagttcaggcagcgcgtgagcgtgctgatggtgccgaacaagacactggaaaccccgaac
taccgcctggagcgcttgaagcacgacgacccgcgcctggaccatatcgaagccagctac
aagctcgccgaagaagtgcaagaccccaccgccgtgacacgccgctcgcaagagccgacc
aacaagcagaccccggtcatcaaaggcgtgctgcccgacgccccggccccggccccaata
ccggctccggctccggccccggctgcacaatcccgccccgaaagcgcagccttgccaccg
ccgggcggccagcggcccgctgccccggcgcccgtggctggcgcagcgcaagagccgggc
tttctgacctggctcaagagcgtgctcggctttggcaccgcgccagcgccaacgcccgca
gcggccacgacaggccgcagcgaaccccggcgcgatggccgcagcgccgaaggccgtggc
cgccgtggcgagcgcacaccccgcgatgccgagggccgcccatcccgtgatgccgaaggc
cgcacaccccgtgatgccgacaaccgcgcagcgcgcaataccaataccgcgcgtgacgcc
gaaggcgcaggccgcgaaggccgggcggtccgtgaaggccgcaatgcccgcgacggtggc
cgtggccgccgctctgcggtgccggatggcgcgccacgccagcagaccgccgacgccagc
agtgacggcagcgcagcgccggtggaaggactgaacggccagcacatcggcaacggcgcg
ccggcccaaccacagcgcggcccgcgccacgagcgtgctgagcgtgctgagcgtgctgag
cgtgctgagcgcggcgagcgtgtcgaaggccgtgccgagcgcggcgctgccgcgccagaa
ggcgccggcgccggccgttttcccgacacgctgccgctggccgcgctgcccgatctggac
ctgagcagcagccccgtcacgctgcacggaaacgatgtcgacggcaccgatggcggcgcc
cccggcagcgaagacccgcagcgccgcgagcgccgttcgcgtgaccgctacggccgctac
cggcgcgatcgccgtgatcgccatgagccaggcccgcgcgacgccgccaccgacgccgag
gccgacgcgccagcgccgatggatgccgaccccgcagccgcgcccgcgcaggacgagtcc
ccgcgccgcagctacttcagcgccgccacgccggcgccggccagcgcagcaccggtggcc
ccggtcccggcgcctgacgaggccgtgatggccgccccggtgaccgccgtcgctgctgcg
ccggcgctggccgaggcggacattgccgtgccggtcgcgcccattgcgccaattgcgcca
attgcgccaattgcgcccattgcgccggttgcgccagtggctgccgtcccggtcaccccg
gccacccctgcggcaaccccggtcgcgcataccctgccccgggttcagtccttcacgctg
cccatcgatgagttgcagcaggtcgccgccacctcgggcctgcaatgggtgaactccgac
gccgacaagatcgctgccgtccaggcggcgattgccgctgagcctgcgccgatccgcgtg
ccgcgtgagcggatgccggtgccggagccagacgatggcccgctggtgctggtggaaacc
cgccgcgacctgtcggcgctcaccctgcccttcgaggcgcaaccgcctgcggcctga
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