Vitreoscilla filiformis: VITFI_CDS0438
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Entry
VITFI_CDS0438 CDS
T04960
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VITFI_CDS0438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vff03019
]
VITFI_CDS0438
Enzymes [BR:
vff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VITFI_CDS0438
Messenger RNA biogenesis [BR:
vff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VITFI_CDS0438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
ASM76217
UniProt:
A0A221KBK8
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All DBs
Position
474517..476031
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AA seq
504 aa
AA seq
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MTIESLACAAQADSAAASSPPAAPARFDTLPLDAKLLRAVADQGYAFMTPIQAKAIPVVL
AGRDVMGAAQTGTGKTAAFSIPLLQKMMRHENASASPARHPVRALVLAPTRELADQVANN
VKAYAKHSNLRVAVVFGGVDMKPQAAELKGGVEVLIATPGRLLDHIEAKNCVLNQVEYVV
LDEADRMLDIGFLPDLQRILSYLPQGNRQTLLFSATFSPEIKKLAGSYLQNPELVEVARP
NATATNVEQVFLSVSEDDKRRVIVKQLRERNIPQAIVFVNSKLGAARLARSFERDNLRTA
ALHGDKSQDERLKSLAAFKAGEVDVLVATDVAARGIDIADLPAVFNFDVPFNAEDYVHRI
GRTGRAGASGVAITLVTHEDARLIGEVEKLIKKKIELQAVELDDDRPRRNTWRRREDEDE
RPYDAAAGTSYASPPPPRSSGPRRSSYSPRDPFFDQPYVPQASNAPAAWENTDPVVPTPS
HARMSPNIRPKRKLAALLGGGPKA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcgaatccctagcctgtgcggcccaggcagactccgctgccgcatcttctccc
cctgcggcacccgcgcgttttgacaccctgccgctcgacgccaagttgttgcgtgcggtg
gccgatcagggctatgccttcatgacgccgatccaagccaaggccattcctgtggtgctg
gctgggcgcgatgtgatgggcgctgcccaaaccggcacgggcaaaaccgccgcgttctcc
atcccgctgctgcaaaagatgatgcggcacgaaaacgccagcgcttcgcccgcccgccat
cccgtacgcgccctggtgctggccccaacgcgtgagctggccgaccaagttgccaacaac
gtcaaggcctacgccaagcacagcaacctgcgggtggccgtggtgttcggcggggtggac
atgaaaccgcaagcggctgaattgaaaggcggcgtcgaggtgctgatcgccacgccgggc
cggctgttggatcacattgaagccaagaactgcgtgctcaaccaagtcgaatacgtcgtg
ctcgacgaggccgaccgcatgttggacatcggctttttgcccgacctgcaacgcatcctc
agttacctgccccaaggcaaccgccaaacgctgctgttttcggccacgttctcgcccgag
atcaaaaagctggcgggcagttacttgcaaaaccctgagctggtcgaagtcgcccggccc
aacgccacggccaccaacgttgagcaggtgttcctgagcgtcagcgaggacgacaagcgc
cgcgtgatcgtcaaacagttgcgtgagcgcaacattccgcaagcgattgtgttcgtcaac
tccaagctcggcgcagcgcggctggcccgttccttcgagcgcgacaacctgcgcaccgcc
gccctgcacggcgataagagtcaagacgaacggctgaagtccctcgccgccttcaaagct
ggcgaagtggatgtgctggtggccaccgacgtggccgcacgcggcatcgacatcgccgac
ctgcccgccgtgttcaacttcgacgtgccgttcaacgccgaggactatgtacaccgcatt
ggccgcaccggtcgggcaggggcatcgggggtggcgatcactttggtgacgcacgaggac
gcccgcctcatcggcgaggtcgaaaagctcatcaaaaagaaaatcgagctgcaagccgtg
gagctggacgacgatcgaccgcgccgcaacacctggcgccgccgtgaggacgaagacgaa
cgcccctacgacgccgccgccggtaccagctacgcgtcgccgcccccgccgcgcagcagc
ggcccacgccgttcgtcttactccccgcgtgacccgttcttcgaccagccctacgtcccg
caggcgtcgaacgcgcccgctgcctgggaaaacaccgacccggtggtgcccacgccgtcg
cacgcccggatgtcccccaacatccgcccgaagcgcaaactggccgcgctgctgggcggt
ggcccgaaagcgtga
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