Aliivibrio fischeri ES114: VF_1167
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Entry
VF_1167 CDS
T00236
Symbol
sbcD
Name
(GenBank) exonuclease, dsDNA, ATP-dependent
KO
K03547
DNA repair protein SbcD/Mre11
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_1167 (sbcD)
DNA repair and recombination proteins [BR:
vfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VF_1167 (sbcD)
Archaeal homologous recombinant proteins
VF_1167 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
DDR
dDENN
PRORP
Motif
Other DBs
NCBI-ProteinID:
AAW85662
UniProt:
Q5E5N4
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All DBs
Position
I:1294503..1295747
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AA seq
414 aa
AA seq
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MRILHTSDWHLGQNFFTKSRRNEHQKFITWLLEQVQENAINAVIIAGDVFDTGAPPSYAR
EMYNQFVVEMNKVNCELIVLGGNHDSVSTLNESKQLLAHLNARVIANTNDDLSTQLLTLP
DNDGGVGAILCAVPFIRPRDVVTSVAGSTGVEKQQALGEAIKQHYHQLYQKALELRKELN
VEAPIIATGHLTALGVKQSDSVRDIYIGTLDGFAADGFPPADYIALGHIHRPQLVAKSEH
IRYSGSPIPLSFDELKSQKQVVMVEFDKQDVTQITPINVPMFQQMKALKGDLENIEKELV
QFKECEETTWLCIEVEVQDYLSDLQQRIQALTQDLNVEVLQLRRARNRSEQTLAQEKTET
LAELTPFDVFTKRIEQETFETEKEQQRAERMTVKFKQILSEVEHKDTDPQEGDA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcgtattttacatacttctgattggcatttaggtcaaaatttcttcacaaaaagtcgt
cgtaatgaacatcaaaaattcattacctggttacttgagcaagtacaagaaaatgccatt
aatgctgtcattattgcaggggatgtgtttgatacaggggcgccaccaagttatgcccgc
gaaatgtataaccaatttgtggtggagatgaacaaagtaaattgtgagttgattgtgctt
ggtggaaaccatgactcagtttcaacattaaatgaatctaaacaattattggctcacttg
aacgcacgagtgattgccaataccaatgatgatttatccactcaattattaacgcttcca
gacaatgatgggggcgtgggcgctattttatgtgcggttccatttattcgtccgcgtgac
gttgtcactagcgtggcgggttcaacgggtgtagaaaagcaacaagcactcggtgaagcg
attaaacagcattatcatcagctgtatcagaaagcactagagctacgaaaagaattaaat
gtggaagcgcctattattgcaactggtcatttaaccgcactaggggtaaaacaatcggat
tcggttcgagatatttatattggtacgcttgatggttttgctgcggatggctttccgccg
gcggattacatagcattaggccatatacaccgacctcaacttgtcgctaaatctgaacat
attcgctattcgggttcgccaatcccattaagttttgatgaattaaaatctcaaaaacaa
gtggtgatggttgagtttgataagcaagatgtcactcaaattacgccaattaatgtgcct
atgtttcaacaaatgaaggcattaaaaggtgatttggaaaacatcgaaaaagaattagtc
caatttaaagagtgtgaagaaacaacttggttatgtattgaagttgaagtgcaagattac
ctttccgatctacaacaacgcattcaggcgctaacgcaagaccttaatgttgaggtgttg
caattgcgtcgtgcaagaaatcgcagtgaacaaaccttagcacaagaaaaaacagaaacc
ttagctgagttaacgccttttgatgtgtttactaaacgtatagagcaagagacgtttgag
acagaaaaagagcagcaacgagctgaaagaatgactgtgaaattcaaacaaattctgtca
gaagtagaacataaagatacagatccacaagaaggtgatgcatga
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