Aliivibrio fischeri MJ11: VFMJ11_1920
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Entry
VFMJ11_1920 CDS
T00754
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vfm
Aliivibrio fischeri MJ11
Pathway
vfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VFMJ11_1920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfm03019
]
VFMJ11_1920
Enzymes [BR:
vfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VFMJ11_1920
Messenger RNA biogenesis [BR:
vfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VFMJ11_1920
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACH66552
UniProt:
B5FG91
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All DBs
Position
I:2045397..2046593
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AA seq
398 aa
AA seq
DB search
MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPIL
EILSEDSTKVRAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQR
LIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDR
QNMLFSATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIK
ENNWDQALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVA
TGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLCMIE
SRLGHLIVRKEIEGFAPRKEVPISILNYKPKRKPAPKN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctaaacttgggttaagtgacccaattttaaaagccatcgacgagttgggt
tataaagcaccaacaccaatccaacaaaaagcgatccctgttgcgcttactggtaaaaac
ctaattgcagcagcacaaactggtacaggtaaaacagccagctttgtattacctatttta
gaaattctcagtgaagactcaacaaaggttcgagcaaaacgtattcgtgccttgatctta
acgccaactcgcgaactcgcgattcaagttgaagaaaacatccaacaatacagcaaacat
atcgatatcacctctcttgctatgtatggtggcgttgactacaaagatcaaaaacaacgc
ttaattgaaggtgttgacgtattagttgcaacgccgggtcgtttgcttgatatgtacact
caacgtgcgattcattttgatgaattagatattctggttcttgatgaagctgaccgcatg
ttagatatgggctttatcgaagacattaataaaattatcgaacgtctaccgttagatcgt
caaaacatgctgttttcagcaacgttatcagatcaagttcgttatttagcaaaaacagcc
atcaataacccaattgagatttcaatttctccaaaaacgacatcttcaccacaaattgat
cagtggttaacgacagttgataaagataagaaatcagcgctgcttagtcatttaataaaa
gaaaacaattgggatcaagcactgatctttattgaaaccaagcacggtgctgcaaaacta
gttagtcaattagaaaaacgtgatatcagagccgaagcgttccacagtggccgtagccaa
gaagctcgtgcaaaagtattaaacgactttaaagaaggcaaactacaatatttagttgca
acagggattgctgctcgtggtattgatattgatgagttaacacgtgtagttaactatgat
ttacctttcccagctgacgattatgttcaccgtattggtcgtactggtcgtgcgggagca
aaaggtgaggcaatttcatttgtttctaaagacgattttaaaaacttatgtatgattgaa
agccgtttaggtcatttaattgtgcgtaaagaaattgaaggcttcgcacctcgtaaagaa
gtaccaatttcaattctaaactataaaccaaaaagaaaaccggcaccaaaaaactga
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