Vibrio campbellii ATCC BAA-1116: VIBHAR_00961
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Entry
VIBHAR_00961 CDS
T00589
Name
(GenBank) hypothetical protein
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vha
Vibrio campbellii ATCC BAA-1116
Pathway
vha05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vha00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VIBHAR_00961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vha03000
]
VIBHAR_00961
Transcription factors [BR:
vha03000
]
Prokaryotic type
Helix-turn-helix
Other families
VIBHAR_00961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_16
AAA_2
AAA_5
HTH_29
HTH_7
AAA
HTH_50
HTH_22
AAA_22
HTH_Tnp_1_2
HTH_17
HTH_IclR
LacI
HTH_30
TIP49
HTH_23
TrmB
DUF134
RWP-RK
ANT
Motif
Other DBs
NCBI-ProteinID:
ABU69960
UniProt:
A7MXL3
LinkDB
All DBs
Position
I:968205..969539
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AA seq
444 aa
AA seq
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MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANTLLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGTDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGNSLDMGLIGESIPMKRLRDQVKRIGPTDVSILIYGESGTGK
EAVARAIHKVSSRSHKPFLSINCRALNEQRFQAEVFGIDADEEMGPSLLEQADGGTVLFN
DILTISKEQQMNLLRFLQEGTIETRDGAKNVNVRVLAANSSDVEKALIDGDFNEELYHYI
NVLRINVPSLKERASDIALLARFYLQEFSKEYNSQAKSFSEDTLKALTRYFWPGNVRELM
NQVKRAVLMSDSVMIEEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISEQTV
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccattccgggatcgctagtcgtagttggcggtact
tacgaaccttggttatcagtactagaacaagtgggatggaagtgtcaccaagtgggtgac
ttacgtaaagccaacacattgttagaagatattggaccatgcattggtatagttgacctc
agccatgatgagttcagtcttaacggtttagctaacttagtgagttctcataagcacgtg
cgttggttggcgttcatccgcgaatctcaacttggaactgataccatctgtcagttcatc
gtgaacttctgtatcgacttcttcactgcgccaatcccagatgcgcagctgctaagcacc
attggccaccaattgggcatgctaaaactagagaagaaagtctggccgagctttggtaat
agcctagacatggggttgattggtgaatctatcccaatgaagcgtctgcgtgatcaagtg
aaacgtattggtccaacggatgtgagtattcttatctacggcgaaagcggtacaggtaaa
gaggccgttgcgcgtgcgattcataaagtctcttcacgctctcacaagccatttttgtca
atcaactgtcgtgcactcaacgagcaacgtttccaagcggaagtgtttggtattgatgcc
gatgaagagatggggccaagcctacttgagcaagccgatggcggtaccgttcttttcaat
gacatcttaacgatttcgaaagagcagcagatgaatctcttgcgcttcttgcaagaaggt
acgattgagactcgcgatggcgcgaaaaacgttaatgtgcgtgttctggctgcgaactca
tccgacgttgagaaagcactaatcgatggtgacttcaatgaagagctttaccattacatc
aacgtactacgtatcaacgttccaagcctgaaagagcgtgcgagtgacatcgctttgttg
gcgcgtttctaccttcaggaattctcaaaagagtacaactcacaggcaaagagcttctcg
gaagatactttgaaggcgctgacgcgttacttctggccaggtaacgtccgtgagttgatg
aaccaagtgaaacgcgcagttctgatgtctgatagcgtcatgattgaagagcatcaccta
gacttgcctcaacgtaacgactcaaaacgcagtctgaagtcgattcgtgagaagagcgaa
cgagatgcattgctggtggtgttggagtcgcactccggtcaggtatcgaatgccgcaaaa
gagcttggtgtatcgcgtgctaccatgtatcgattactgaacaaacacaacttgatttca
gagcagacggtataa
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