Vibrio harveyi: AL538_01980
Help
Entry
AL538_01980 CDS
T04380
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vhr
Vibrio harveyi
Pathway
vhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AL538_01980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vhr03400
]
AL538_01980
Enzymes [BR:
vhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AL538_01980
DNA repair and recombination proteins [BR:
vhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AL538_01980
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL538_01980
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL538_01980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AMF96585
UniProt:
A0A454B398
LinkDB
All DBs
Position
1:447868..449289
Genome browser
AA seq
473 aa
AA seq
DB search
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE
AALITGITPQKAMQEGLPEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMIPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVH
LNKCPILAPAKTLTAENAEVIGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSND
VDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQ
EQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaagacaatcagcccacttttttctttttcgattacgagacttggggaacaagt
ccagccaaagaccgcccaagccagtttgctggcgttcgcactgatgaaaacttcaatatc
attggtgaacctttggtgatgtactgtcgtccacctgctgattaccttccttcgccagaa
gcagctttgatcactggtattacaccacaaaaagcaatgcaagaaggcttacctgaacct
gagtttattgccaaaattcatgctgaattgtctaaaccaaagacgactagccttggctac
aacagcatacgttttgatgatgaagtcactcgttacacttgctaccgaaacttcatcgac
ccatacgcatggagctggcaaaacggcaactcacgatgggatttgcttgacgtgatgcga
gcatgtcatgccctgcgtcctgaaggcgtagaatggccagagaacgatgaaggctttaca
agcttcaagctagagcatttatccgtagcgaatggcattgaacacagcaatgctcacgat
gcgatggccgacgtgattgccacgattgaaatggcgaagaaagttaaagccgcccaacct
aagctatttgactactttttctcgatgcgtaacaagcgcaaactcaatgagctggttgat
attgtcaatatgattccgttgatgcatgtatcaggcatgcttgggcgtgaatgccaatac
acaagctggattgtgcctgtggcttggcacccaaccaacaacaacgctgttatcacgatt
gatttagccaaagatcctcagccgatccttgaactttcagcggaagaactgaaagaacgc
ttgtacaccaagcgtgacgaattgggcgacttactgcccgtaccagtgaagctagtgcat
ctgaacaagtgccctattctcgctccagcaaaaacattaaccgcggaaaatgcggaagtc
attggtattgaccgccaacaatgtttaaacaatttagcgttgttgcgccaacacccagag
atccgagagaagctgattagtctattctctatagaacgtgaattcgaaaagagtaatgac
gttgatacgcagctttacgatggctttttctcgcctgctgatcgcgctgctatggacatc
attcgtgaaaccgatccgaataacttagccgcactggacattgaattcgatgataaacga
atcaagccattgcttttccgttaccgtgctcgccattatgcaggcacattagatgaacaa
gaacaaagacgctgggcacaacattgtcgtgaagttttcgaaagtcagattgaagagtac
atgatgaatttagaaaacttagttcacgaacatgaaagtgacgaaaagaagatagcaata
ttaaaatccgtctatcgttatgtagagagcctagcctcctaa
DBGET
integrated database retrieval system