Virgibacillus sp. SK37: X953_00640
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Entry
X953_00640 CDS
T03219
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X953_00640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vir03021
]
X953_00640
03400 DNA repair and recombination proteins [BR:
vir03400
]
X953_00640
Enzymes [BR:
vir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X953_00640
Transcription machinery [BR:
vir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X953_00640
DNA repair and recombination proteins [BR:
vir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X953_00640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AIF42040
UniProt:
A0A075JJV8
LinkDB
All DBs
Position
125153..128689
Genome browser
AA seq
1178 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTASYEWFLEEGIREMFKDISPIEDFTG
NLSLEFVDYSLGEPKYPVDESKERDVTYNAPLRVKVRLINNETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYYNEKIDKNGKRGVAATVIPNRGAWLEFETDAKDVA
YVRIDRTRKLPITVLLRALGFGSDQEIIDLLGDNEYLKNTLEKDNTETTEKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLAHVGRYKMNKKLHIKNRLFNQVVAEPIVDPETG
EVLAQKGDKLERKLLNKIIPYLEKEEDKLGERIAEPHEGVLDEQITLQSIKIVDPTDPSG
EKELTVIGNADVDTSVKNITPADILSAISYFFNLLHRVGNTDDIDHLGNRRLRSVGELLQ
NQFRIGLSRMERVVRERMSIQDTSSITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPL
AELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKV
NKFGFIETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANAKLDDDGTFTDEEVIARFR
GENTAVPREQIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPI
VGTGMEYVDGKDSGAAIICRHEGIVEKVEAKEVLVRRISEVDGKEVKGDLDRYKLQKYIR
SNQGTCYNQRPIVSEGNRVTKGEILADGPSMEDGELALGRNVLVGFMTWEGYNYEDAIIM
SERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALKNLNEHGIIRVGAEVT
DGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNRED
GDELPPGVNQLVRAYIVQKRKIHEGDKMAGRHGNKGVISKILPEEDMPFLPDGTPIDIML
NPLGVPSRMNIGQVFELHLGMAARQLGIHVASPVFDGATEEDVWETLEEAGMPRDAKTIL
YDGRSGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEILTVKSDDIVGRVKTYESIVKGDNVPEPGVPESFKVLIKELQS
LGMDVKMLSSNEEEIDMRELEEEDTQQASKLNLEVEES
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtatggacggcaccgccaacgcagaagctatgcgcgtatt
agtgaagtattagaattgccgaatcttatcgaaattcaaacagcttcttatgagtggttc
ctggaagaaggcattagagaaatgtttaaggatatttctcctattgaagattttacaggt
aacctttcacttgaatttgtcgattacagcttgggtgaaccaaaatatcctgtggatgaa
tctaaggaaagagatgtcacttataatgctccacttcgagtaaaggttcgcttgattaac
aatgaaacaggcgaagtaaaagaacaagaagtattcatgggtgatttcccgcttatgaca
gatacaggtacgtttgtcattaatggtgcagagcgtgttatcgtttcacagcttgtgcgc
tcacctagtgtttactacaatgagaaaattgataaaaacggaaagaggggcgttgcagca
acagttattccaaaccgtggtgcatggttggagttcgaaactgatgcaaaagacgtggcc
tatgttcgtatcgatcgcacacgtaaattgccaattacggtattattacgtgctcttggc
tttggctcagatcaagaaattatcgatttgctaggtgataatgaataccttaaaaataca
ttagaaaaagataacacagaaacaaccgaaaaagctttattagagatttatgagcgttta
cgtcctggcgagccgccaacagtagaaaatgcaaagagcttacttgtttctagatttttc
gatccaaagcgttatgatctagcgcatgttggtcgctataaaatgaataaaaaattacac
ataaagaatcgacttttcaaccaagttgttgctgaacctattgtggatcctgaaacagga
gaggtactggcacaaaagggtgataaactcgaacgtaagttactaaataaaattatccca
tacttggaaaaagaagaagacaagcttggtgagagaattgctgaacctcacgaaggtgtt
ctagatgagcaaattacgcttcaatcaattaaaatcgtcgaccctacagatcctagcgga
gaaaaagagctaactgtaatcggaaatgctgatgtagataccagtgtaaaaaatattaca
cctgcagatattttgtcagctatcagttatttctttaatctactacatcgtgtaggaaat
acagacgatattgatcatttggggaatcgtcgtttgcgttctgttggagagcttttacag
aatcaattcagaattgggttgtcccgaatggaacgtgttgtgcgtgaacggatgtctatt
caggatacatcaagcatcacaccacaacagttaatcaatattcgacctgtaatcgcatcg
attaaagagttctttggtagctctcagctgtcacaatttatggaccagaccaatccattg
gctgaattaacccataaacgccgtttgtcagcattaggaccaggtggactgacgcgtgaa
cgtgccggcttcgaagtgcgtgacgtacactattcccactatggccgcatgtgtccgatc
gagacaccggaaggaccgaatatcggacttattaactcattgtcaagttatgcaaaagtt
aataaatttggcttcattgaaacaccttaccgccgggttgatcctgaaacaggtaaggta
actgctcaaattgattacttaactgccgatgaggaagacaactatgttgttgctcaggca
aatgctaaattagatgatgacggcactttcacggatgaagaagtaatcgctcgtttccgt
ggggagaatacagcagtaccacgtgaacaaattgattatatggatgtatcaccaaagcaa
gttgtttccgctgcgacagcatgtattcctttcttggaaaacgatgactccaaccgtgcg
ctaatgggggcaaacatgcaacgtcaggcagtaccacttatgaacccggaagctcctatt
gttggtacaggaatggagtatgtagacgggaaggattctggtgcagctattatttgccgt
cacgaaggtattgtagaaaaagtagaagcgaaagaggttcttgtccgccgcatatccgaa
gtggatggaaaagaagtaaaaggcgatttggatcgttataaattacaaaaatatattcgt
tccaaccagggaacatgctacaaccagcgacctattgtaagcgaagggaaccgtgttact
aaaggggaaatccttgcagatggaccttccatggaagatggggagctagcccttggaaga
aacgtccttgttggctttatgacttgggaaggttataactacgaggatgctatcatcatg
agtgagcgacttgtgaaggatgatgtgtatacgtccatccatattgaagaatacgaatct
gaagctcgcgatacaaaactcgggccggaggaaatcacaagagatattcctaacgttggg
gaagaagcacttaaaaacctgaatgaacatgggattatccgagtaggcgctgaagtaaca
gatggagacatccttgttggtaaggttactcctaaaggtgttacagagctatctgctgaa
gaacgacttcttcacgcaatctttggcgagaaagcaagggaagttcgagacacctcccta
cgtgtacctcacggagcgggcggaattgttcttgatgtgaaaatctttaatcgtgaagat
ggcgacgagcttcctcctggtgttaatcaacttgttcgtgcatatatcgtgcaaaagcgt
aagatacatgaaggagataaaatggcaggtcgccacggtaacaagggtgtaatctccaaa
atcttaccggaagaggatatgccattcttacctgatggaactccaattgatattatgctt
aatccgttgggtgtaccatcccgtatgaatatcggacaggtgtttgagttacaccttggt
atggctgcgagacagcttggaatccatgtcgcatcacctgtttttgatggagctacggaa
gaggatgtttgggaaacgctggaagaggctggtatgccaagggatgcaaaaacaatcctg
tatgatggaagatcaggtgaaccttttgataaccgtgtttccgttggtgtaatgtatatg
atcaaacttgcgcatatggttgatgataagttacacgctcgttcgacaggcccttattca
cttgttacacaacaaccgcttggtggtaaagctcaattcggtggtcagcgtttcggtgag
atggaagtgtgggcacttgaagcgtatggtgcagcatatacgttgcaggaaatccttact
gtgaaatctgatgatattgtcggcagggtgaaaacatatgaatccattgtaaaaggggat
aatgtacctgagccgggagttccggaatcgttcaaggtattaattaaagaactgcaaagt
ctgggaatggacgttaaaatgctctccagtaacgaagaagaaattgatatgcgtgaactg
gaagaagaagatacgcaacaggctagtaaattaaatcttgaagtagaagaaagttaa
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integrated database retrieval system
