Virgibacillus sp. SK37: X953_08680
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Entry
X953_08680 CDS
T03219
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03030
DNA replication
vir03430
Mismatch repair
vir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X953_08680
03430 Mismatch repair
X953_08680
03440 Homologous recombination
X953_08680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vir03032
]
X953_08680
03400 DNA repair and recombination proteins [BR:
vir03400
]
X953_08680
Enzymes [BR:
vir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
X953_08680
DNA replication proteins [BR:
vir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
X953_08680
DNA repair and recombination proteins [BR:
vir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
X953_08680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
PARP_reg
Motif
Other DBs
NCBI-ProteinID:
AIF43218
UniProt:
A0A075JT02
LinkDB
All DBs
Position
1574464..1577814
Genome browser
AA seq
1116 aa
AA seq
DB search
MSYTHLQVRTGYSLMNSTITIDKLVNKAKELQFETLALTDENVLYGAVSFYKACVQQGIK
PIIGMVTSILLEDDSLEDCILLAKNNTGYQDLMKLSTLLQENKSSHITLEQLSHYTNELF
GIIPAAHSQLTSLIKKEDPDIYSYMETRQAVFPEESFYIGIEDHGTEDEKSINDKLHHFY
QIQPFPVVALQDVRYLNEKDDVAFDCLQAMKQGNEWDMRLSGPQVRQRYLKSPSEMLGLF
QQNWPEAYKHNKQISDNCVVTFDFNKRMIPAYPLTVNENVHTYLEKECWNQLDRRYQTIT
KEITERLTYELKVIKSMEFSDYFLIVSDFIAYAKRNNVLVGPGRGSAAGSLVAYVLGITD
VDPIRFDLLFERFLNPERVTMPDIDIDFSDRRRDEVIDYVKDKYGEKHVAQIITFGTFAA
RSLIRELLKTLNIGQEDSNFVLKHLQGHKRIVDIINESDELKAYVKQSEKLKVLFSIATK
LEGIPRHISTHAAGIVISEEPLMEHIPLTVGANEGLLTQYPMNDLEAVGLLKIDLLGLRN
LTLLEKMKESIYYFNRKKIDLERIPEQDEKTFHLLQAGKTNGVFQFESQGMQQVLKRLKP
TEFEDLVAVNALYRPGPMDYIPTYINRKHRLEETTYPHPDLAPILSKTYGVLVYQEQIMQ
IAHQIAGFTLGEADILRRAVSKKQQEVMGKQKEAFIKGCLSNGYDKSVAEEIFDWIVKFS
NYGFNRSHAVAYSKISYQLAYFKAHFPAHFFAELLSSIAGQQEKIQQYIKEIKGLGVEVA
PPSINRSFGKYSVEGNKIRIGLLSIKGIGNQVVREIVRIRKDGRFKNLFDFCMRVPLKII
NRKILENLIMAGAFDETYENRASLLASIDQALEQGDLFREFNDQPSLFQDKLELEANYVD
IEDFSQFKKLTDEKELVGIYLSSHPLKNYRNKLQQGGFTTLLQAEQLVGRRNSKAGAVIQ
SMKVIRTKRGDSMAFLTLGDETGEMEAVMFPDLYRAVSRWIKEEQLVSVTGKIENRNGRL
QWVLADIKPLEEADLPHVDNRRLFIKLSPHNKEEGLALIKKIAKRFPGSTPILVYLEQDR
ITYQLKNVAIHPTTECINEMVDHFGKTCVVLDNKSK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacactcatttacaggtgagaacaggttatagcctgatgaacagcaccataacc
attgataaattagtaaataaagcaaaagaacttcagtttgagacacttgccttaacagat
gaaaatgtgttgtacggtgctgtctctttttataaagcttgtgtgcagcagggaataaag
ccgatcattggtatggtgacaagcatactgttagaagacgactccttggaggactgtatc
ttattagccaaaaataatactggctatcaagatttaatgaagcttagtacactcctgcag
gagaataaaagtagccatataaccttagagcaactatctcactataccaatgaattgttt
gggattattcctgctgcccattcacaacttacttctttaataaagaaagaggaccccgat
atttattcctatatggaaactagacaggctgtttttccagaggagagtttttatattgga
attgaagatcatggcacggaggatgagaaaagcattaacgataagcttcatcatttttac
cagatccaaccctttcccgttgtagcattacaagatgttcgttacctaaatgaaaaagat
gatgtggcgtttgattgcttacaggcgatgaaacaggggaacgaatgggacatgcggttg
tcgggacctcaagtaagacaacgttatttaaaatcaccttcagagatgttggggttgttc
caacagaattggcctgaggcatataagcataataagcaaattagtgataactgtgtggta
acctttgattttaacaagcggatgattccagcctatccattgacagttaatgaaaatgta
catacgtatttggaaaaggagtgttggaatcaattagatagaagataccaaacaattaca
aaagaaataactgaaagattaacttatgaactaaaagtcattaaatccatggaattcagc
gattattttttaatcgtatctgattttattgcatatgcaaaaaggaataacgtcttggtt
ggtccgggaagagggtcggctgctgggtcgttagtagcctatgtactcggcattactgat
gttgatccgatccgttttgatcttctttttgaacgatttctgaaccctgaaagagtaaca
atgccggatattgatatagacttttcggatagaagaagagatgaagtcattgattatgta
aaagacaaatatggtgaaaagcatgttgcgcaaatcattacatttggaacttttgcagca
agatcattaattagggaactcttaaaaacacttaatattggacaagaagatagtaacttt
gttttaaaacatctccaaggacataaacgaatcgtcgatattatcaatgaatcagacgag
cttaaagcgtatgtgaagcaatcggaaaagttaaaggttttgttttctatagctacaaaa
ctagaaggaattccaagacatatttctacacatgcagcaggtattgtaattagcgaagaa
ccgctcatggaacatattcctttaacagttggtgcaaatgaaggtcttctaacacaatat
ccaatgaatgatttagaagcagtaggattattgaagattgatttattaggactgcgaaat
cttacgcttttagaaaaaatgaaggaatccatttactacttcaatcgaaagaaaatagat
ctagaacgtattcctgaacaggatgaaaagacgtttcacctcctacaagcagggaaaacg
aacggggttttccaatttgaatctcaaggtatgcaacaagtacttaaacgattgaaacct
actgaattcgaagacctcgttgcggttaatgctttgtatcgtccaggcccaatggattat
attcctacttatattaacaggaagcaccgactggaagaaactacttatccacatcctgat
cttgcacccattttaagcaaaacgtatggtgtattagtatatcaggaacaaattatgcaa
atagcgcatcagattgctggttttacgcttggtgaggctgatattttacgaagggccgtc
agtaagaaacaacaggaagttatggggaagcaaaaagaagcgtttattaaagggtgtctg
tctaatgggtatgataaatcagtcgcagaagaaatttttgattggattgtaaagttctcc
aattatgggtttaaccgaagccatgcagtagcctacagtaaaatttcatatcaactggcc
tattttaaagcacattttcctgcacatttctttgcagagttattaagctctattgctggt
cagcaagaaaaaatccagcaatatataaaagaaataaaagggctgggagtggaagttgcg
cctccttccataaaccgcagttttggaaagtattctgttgaaggtaataaaatccgaatt
ggcctgttaagtattaaaggaatcggcaatcaagttgttagagagattgtccggatacga
aaagatggacgatttaaaaacttattcgatttttgcatgcgggtaccgttgaaaattatt
aatcgaaaaatattggagaatcttattatggctggagcttttgatgaaacatatgaaaat
cgggcaagtctgcttgcatccatagatcaggcactggaacagggagacctcttcagggag
tttaatgatcaacccagcttattccaggataaactggaattggaagctaattatgtggac
atcgaagactttagtcaatttaaaaaattgacagatgaaaaagaactggtaggaatatac
ctatcaagtcacccacttaaaaattaccgaaataaactgcagcagggaggattcactaca
ctacttcaggcagaacagttggttggaagaagaaatagcaaagctggagcagtcatccaa
tctatgaaagtgatacggacaaaacgcggagactccatggcgtttctgacgttaggcgat
gagacaggagaaatggaggcggttatgtttccagatttatatcgagctgttagcagatgg
ataaaggaggaacagttggtttctgtaacaggtaagatagaaaacagaaacggaagatta
caatgggtgcttgcagatataaagccattggaagaagcagatcttccgcatgtcgataat
cggaggctatttataaagctctctccccataataaagaagaagggttagcgcttattaaa
aaaatagcgaaacgatttcctggatctacgccaattttagtatatttggaacaagaccga
ataacataccaattaaaaaatgttgccattcatccaacaacagaatgtataaatgaaatg
gtggaccattttggaaaaacttgtgtagttttagataacaagagtaagtaa
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