Vibrio japonicus: NP165_09795
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Entry
NP165_09795 CDS
T08510
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NP165_09795 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_09795 (recD)
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NP165_09795 (recD)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NP165_09795 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Helicase_RecD
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
DEAD
TrwB_AAD_bind
AAA_28
CbiA
T2SSE
UvrD_C
MukB
SRP54
TsaE
NTPase_1
RNA_helicase
DUF87
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UUM30000
LinkDB
All DBs
Position
1:complement(2073953..2076073)
Genome browser
AA seq
706 aa
AA seq
DB search
MTYLVSKLKQLADKGSIRQLDYQFARFIFSQSQDDQLAFIAGVVSSELGKGHICLPLTDV
QGQSIDLVAKLGLFGETAIELNQHLVDIDWPSKLSSASLVGKALVGKSAESLPLIFDGER
LYLHRYWHYEVTLAERLNSFGSPMNLKPEKLKKLSELLDHLFARNYRYLFEDLKKVEQAG
QSSNVVRQRLVCDHLDVVSEDLLDWPTIDQKLVGVSRVEKLTVLDELVPLSHCVNWQKVA
AAVALTRNFAVISGGPGTGKTTTVTKLLAALIEQSKRGDESPTIKLVAPTGKAAARLTES
IGKAVAQLPVSPDLKLAIPTDASTIHRLLGAIPNSAEFRHNQHNPLHLDILVVDEASMVD
LPMMHKLVDAMPKHARLILLGDKDQLASVEAGAVLGDICSFTQLGYSSMQAQLVSQLTGY
TTLSHGSTPSTTIADSLCMLQKSYRFDARSGIGQLAKAVNAGSAQRVDLVWQKEFGDIEK
FPIDSQHYNQLIQTLVGEYSCYLERIDKVALNPETGEPESVEQRAKATLDAFGKCRLLCA
VREGDFGVSGLNTRIEKALAARKKIKDSDEIWYHGRPVMVTRNDHALGLYNGDIGICIST
LVDGESKLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHKSQGSEFEHTLMILPPEFTPI
LTRELIYTGITRAKSRLSLYVDERVIKRGIKIRTERASGLISRLRS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacgtaccttgtttctaaattaaagcaactggccgataaaggttctatcagacagctc
gattatcagtttgccagatttattttttcccaatctcaagatgatcaattagcgtttatt
gcaggtgtggtgagtagcgaactgggcaaggggcatatttgtttgccactgactgacgtt
caagggcagagcattgacttagttgcaaagcttggtctgtttggtgaaacggccattgaa
ttaaaccaacaccttgtcgacattgattggccaagtaaactttctagcgcgtctttggtt
gggaaagcattagttggaaaatccgcagagtcattaccgcttatttttgatggtgaaagg
ctttatttgcatcgttattggcactatgaagtcactttggctgagcggctgaatagcttt
gggtcaccgatgaacctaaagcctgagaagttaaaaaagctctcagagttattggatcat
ttgtttgccagaaactatcgctacctgtttgaagaccttaaaaaagtggagcaggcaggg
caatcttcaaatgtggttcgtcagcgcttggtgtgcgaccatcttgatgtcgtgagtgaa
gatctgctcgattggcctactatcgatcaaaagcttgttggcgtgagtcgagtggagaag
ttaacggtacttgatgaactggtgcctctgtcacattgcgtgaattggcaaaaagtcgcg
gcagcggtcgccctcacaagaaattttgctgtgatttctggtgggccgggaacgggcaaa
accacgacggtcacgaaactgcttgctgctttgatcgagcagtctaagcgtggagacgaa
tcaccgacaatcaaactggtcgcgccgacagggaaagcggcagctcgattgacagagtcg
attggtaaagccgtggcacaattgccagtatccccagatctgaaactagcgataccaacc
gatgccagtacgattcaccgtttgttgggggcgatccccaatagtgcagagttcagacat
aaccagcataacccgcttcacttagatattctggttgtggatgaagcatccatggttgac
ctacctatgatgcataagctggtggatgccatgcccaagcatgcccgcctgatattgttg
ggtgataaagatcagttagcgtctgtagaggcgggggcggtattgggcgacatatgttca
ttcacccaattaggctatagctcaatgcaagcccagttggtgtctcagttgactggatac
acaaccttgtctcatgggtctacaccgagtacgacaatcgcagacagtttatgcatgctg
caaaagagttatcgatttgacgcgcgatccggtattggacagttggcgaaagcggttaat
gcggggtcggcgcaacgtgttgacttagtgtggcaaaaagagttcggcgatattgaaaag
tttcctatcgacagtcagcactacaatcagctgatacaaaccttggtcggtgagtatagc
tgctacttagaacgcatcgataaggtagcgttaaaccctgaaaccggtgagcctgagtca
gtcgaacagagagcgaaagcaacactggatgcgtttggaaaatgtcgtcttttatgtgct
gtaagagaaggtgattttggcgtgtccgggctcaataccagaatagaaaaagccttagca
gcgcgcaaaaaaatcaaagactctgatgagatttggtatcacggtcgacctgtgatggtc
acgcgcaatgatcacgcccttggcttgtacaatggtgacattggaatctgtatcagtacg
ctggtggatggcgaaagcaagttgaaagtcttttttgaattgcctgatggttcggtgaaa
tccgtgttgccaagtcgcgttcctgaacacgaaaccgcttatgcgatgacgatccataaa
tctcagggcagtgaatttgaacatacgttaatgattttgccacccgagttcacaccgatc
ttaacgcgagaacttatctataccggaatcacacgtgcgaaaagtcgattgagcttgtat
gtcgatgaacgagtgattaagcgaggcataaaaattaggacggagcgggcaagtgggtta
atcagtcgattgagaagttag
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