Vibrio japonicus: NP165_09800
Help
Entry
NP165_09800 CDS
T08510
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NP165_09800 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_09800 (recB)
Enzymes [BR:
vjp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NP165_09800 (recB)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NP165_09800 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
AAA_11
ResIII
AAA_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
UUM30001
LinkDB
All DBs
Position
1:complement(2076076..2079696)
Genome browser
AA seq
1206 aa
AA seq
DB search
MTVKSVATPLNTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGCSETKHQVPLTVD
QILVVTFTEAATAELRDRIRARIHDARLAFARGKSSDPVIEPLLEEIADHKQAAEILLQA
ERQMDEAAVFTIHGFCQRMLTQNAFESGSRFDNEFVTDESHLKAQIVADYWRRNFYPLPI
NLAGEVRRIWASPGALLGDINNYLTGSPLKLTVEAMKGGLAELHQENLKRIEELKANWRN
DQDDYLALISESDVNKRSYTKKSLPEWLDAVNAWAESETTNYDYPDKLEKFAQSVLNEKT
PKGTPPTHSVFEAIDAFLAEPVSMKAPLLAHAIEHCRAMLAQAKQQKQWLSFDDLLTNLS
ASIDNDESEQLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNRPECGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSSHFTLGTNWRSSADMVAAVNQIFELPDSPFIYDEDIPFLPV
NHSPKAQQRIWTMGGQKKPALTYWLQEADEKPLPKGDYLKEMAKATASQIQEILTASQDQ
QAYFESDKGKHEIQAGDIAVLVRTGSEGRMVKEALAKQGIASVYLSNRDSVFTSTVAQDV
QRLLQAVLTPENDRALRASLASELFALDAGKLDKLNNDENEWENAINEFKEYRRLWVQRG
VLPMLRSVMSKRHIAERLLEEENGERALTDLMHIGEQLQQASQELDSDHGLLRWLAQVIS
DAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVLSYREASEAKYYDAKL
DRTVLDITGQDASLAQADKERLAEDLRLIYVALTRAVYGCFVGTAPIRNGRSTKEPTGVH
RSAMGYLLQNGQEGGISDLTQALQNQVQGLDCVSLADTPDEQGRPFVLLQAEEVQLSARE
LKNEIDRHWRITSYSGLIKQGHNQHSDDALTDLMRLDVDSSGEDDQDELVEPEQTIFTFP
RGARPGTFLHTLFEEVEFTQSATSEDNTQIIISLMESEQLDETWLPVLQTLIDTVLATPL
DGKSIKLNQKQPSQRLVEMEFLLPIEVLAAPALNRVIQRHDPLSAKAGDLGFQTVQGMLK
GFIDLVFEHNGQYYVLDWKSNYLGDDVAHYHGDALKAAMADHRYDLQYQIYALALHRFLR
SRLPNYDYQKHFGGVYYLFLRGMDGQSDNGIFSAKPTLEFLQDMDRLIDGQPIDTKHNSS
GQMELI
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaagtcagtggctactccgcttaataccatgacttttccactgcatggtgct
cgcttaatcgaagcctctgcgggaacaggaaagacgtttaccattgcaggtctgtatctg
aggttacttttaggtcatggctgctctgaaaccaaacatcaggttcctctgacggtcgat
caaattctggtcgtgacgtttaccgaagcggcaacggcagaactgagagatcgtatccgc
gctcgtattcatgatgcgcgtttagcctttgcccgaggaaaaagcagtgatccggtcatc
gagccattactagaagaaattgcagaccataaacaagcggctgagattctgttgcaagca
gagcgacaaatggatgaagcggcggtgtttaccatccatggtttttgccaacgcatgctg
acgcaaaatgcctttgagtctggtagccgattcgacaacgaatttgtgaccgatgagagt
catctaaaagctcagattgtcgcagattactggagacgaaatttctatccgctgccaata
aatcttgctggagaagtacgccgtatatgggcatcgcccggcgctttgcttggtgacata
aacaactatctgacgggttcacctttaaagctgacggtagaagcgatgaaaggtggcttg
gcagaacttcaccaagagaacctaaagcggattgaagaattaaaagcgaattggcgaaat
gaccaagatgactatctggcgctgatcagtgaatccgatgttaacaagcgtagttatacg
aaaaagtcactgccagagtggttggacgcggtcaatgcgtgggcagagtcggaaacgacc
aactacgactacccagacaagctagagaagtttgctcaaagtgtattgaatgagaaaaca
ccgaaagggacacctccaacgcactcggtatttgaagcgatagacgcttttcttgcagag
ccagtttcgatgaaagcgccgctactcgcacacgcaatcgaacattgccgagctatgttg
gcacaagctaagcagcaaaagcagtggctctcatttgatgatctactcactaatctatct
gcatcgattgacaatgatgagtccgaacaactcaccgagagaatccgcaccctttatccc
gttgcgatgatcgacgaattccaagataccgatccactgcaatacagcatcttcagccgt
atttaccttaatcgccctgaatgtgggctatttatgatcggtgacccgaaacaggcgatt
tacggtttccgaggcgcagatatttttacctacattaaggcgcggaatcaggtttcttca
cactttacacttgggacgaactggcgctctagcgcggatatggtcgctgcggtaaatcag
atttttgaactgccagacagcccgtttatctatgacgaagatatcccatttcttccggtt
aaccatagcccgaaagcccaacaacgcatttggactatgggtggtcaaaagaaaccagca
ttgacgtattggttacaagaagcggacgaaaaaccgttgccgaaaggggattacctgaag
gagatggcaaaggcaacagcctctcaaattcaggaaatactgaccgcttctcaagatcag
caagcgtattttgaaagcgataaaggcaagcatgagattcaagcgggtgacattgctgtc
ctcgtccgtaccggaagtgaagggcgaatggtcaaagaagccttggcgaaacaaggtatt
gccagcgtttatctgtctaaccgagatagtgtttttacgtcgacggttgcacaagatgta
cagcgtttactgcaagcggtgctaactccggaaaatgatcgcgcactaagagccagtttg
gcttcagagctgttcgccttggatgcggggaagcttgataaactcaacaatgatgagaat
gagtgggaaaacgcgattaacgagttcaaagagtaccgcaggctatgggttcaacgcggt
gtgctacctatgctccgtagcgtaatgagcaaacgccatattgccgagcgactcctagaa
gaagaaaacggagagcgtgcattaaccgatttgatgcatattggtgagcaattacagcaa
gccagtcaggaattggatagtgaccatggcttactgcgttggcttgctcaggtgatcagt
gatgctgaaaacggactaggtggcagtgatgatcagattcaacgtttggagtctgagcgt
aatttggttcaaatcgtcaccatccataaatccaagggtttggaatatgatttggtcttc
ttaccgtttgttttgagttaccgcgaagcgagtgaagccaagtattacgatgcgaaatta
gaccgcactgtactggatattacagggcaagatgcgtccttggcgcaagccgataaagag
cgactggcggaggacttacgtttgatctacgtggctctgactcgcgcagtctatggctgt
tttgtgggtacagcaccgattcgaaatggccgctcgaccaaagagccgacgggggttcat
cgcagtgcaatggggtatctgttgcaaaatgggcaagaagggggcatttcggatttaacg
caagcgcttcaaaatcaggtgcaagggttagattgtgtttccctcgcggatacgcctgat
gagcaaggtcgtccgtttgttttgcttcaagcagaagaagtacagctgagcgccagagaa
ctaaaaaacgagatagacaggcattggcgcattaccagttattctgggcttatcaagcaa
gggcataaccagcatagcgatgatgctttaaccgacttgatgcgtttggatgtcgattcc
tccggagaggacgatcaagacgagttagtcgagccagaacagacaatttttacgtttcca
cgaggcgcgcgcccgggtacgtttttgcatacgctgtttgaagaggtcgagttcacccaa
tcagccaccagcgaagacaatactcagattattatttctctgatggaaagtgagcaattg
gatgaaacttggttgccagtgttgcagacgctgattgataccgttttagcgacgccgctt
gatggtaagagcatcaaactcaatcagaaacaaccctcgcaacgactggtagaaatggag
ttcttactgcctatcgaggtattagctgcgcctgcgctcaatcgagtgattcagcgtcac
gatccattgtctgctaaagcgggagatctcgggtttcaaacggtgcagggaatgctgaaa
ggctttattgacctggtatttgaacataatggtcagtattacgttctggactggaaatcg
aactatctgggtgacgatgttgctcattatcacggcgatgcgctgaaagcagccatggct
gaccaccgttacgatcttcaatatcaaatttatgcattggctttgcatcgcttcttgcgt
agtcgattacctaattacgactatcagaaacattttgggggcgtctactacctgttcttg
cgcggcatggacggccaaagtgataacggcattttttcggcgaagcccacgttagagttt
ttacaggatatggataggttgattgatggacagcctatcgatactaaacacaacagttct
ggccaaatggagttaatttag
DBGET
integrated database retrieval system
