Vibrio mimicus: AL543_07400
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Entry
AL543_07400 CDS
T04381
Name
(GenBank) RNA pseudouridine synthase
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
vmi
Vibrio mimicus
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vmi03009
]
AL543_07400
03016 Transfer RNA biogenesis [BR:
vmi03016
]
AL543_07400
Enzymes [BR:
vmi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
AL543_07400
5.4.99.29 23S rRNA pseudouridine746 synthase
AL543_07400
Ribosome biogenesis [BR:
vmi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AL543_07400
Transfer RNA biogenesis [BR:
vmi03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
AL543_07400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AMG02876
UniProt:
A0A1D8S8I3
LinkDB
All DBs
Position
2:complement(302278..303015)
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AA seq
245 aa
AA seq
DB search
MAMTEYNPPKEPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVV
HRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQDEGEVNLPLCCDWP
NRPKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLY
APQEAVEFADRLQLHAAELCFYHPRSHWLRTLFVPCDFYPEAEEQILQHFDPERKLPDYK
KLSQD
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgaccgagtacaatccacccaaggaaccgtggattgatgtgatttatgaggat
gaacacatcatcgcagccaacaagccttctggtttgttatctgttcctgggcgacctgtt
gagcactacgacagtatgtgggctcgtttggtggattactgccctgatgtgaaggtcgta
caccgtttggatatgtcgacttctgggttgatcctgtttgctaaaggcaaacatatggaa
tcggcattgaagaagcagtttcagtatcgtctcactcataaaatctactatgcccgcgta
tggggtgtgatggagcaagacgaaggcgaagtgaatttgccgctgtgttgtgattggcca
aaccgcccgaaacagaaagtctgttttgaagaggggcgtgattctctgacgcgctatcaa
gtcgtaaagcgtgaagagaaaaccacagtcgtacgcctcatcccgatcactggacgctct
catcagttgcgtgtgcacatgcaatcgctcggccatccgattgtcggtgatgatctttac
gcgccacaagaagccgtcgagtttgccgatcgtctgcaactgcacgccgcggagctgtgt
ttctaccatccacgtagtcattggctacgcactttatttgtcccttgtgacttctatccc
gaagccgaggagcagattttgcagcatttcgatcctgagcgaaaattaccggactataaa
aagctatcccaagactaa
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