Vibrio natriegens: PN96_00120
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Entry
PN96_00120 CDS
T04636
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vna
Vibrio natriegens
Pathway
vna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PN96_00120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vna03021
]
PN96_00120 (rpoB)
03400 DNA repair and recombination proteins [BR:
vna03400
]
PN96_00120 (rpoB)
Enzymes [BR:
vna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PN96_00120 (rpoB)
Transcription machinery [BR:
vna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PN96_00120 (rpoB)
DNA repair and recombination proteins [BR:
vna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PN96_00120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
ALR14487
LinkDB
All DBs
Position
1:16779..20807
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLME
LVPDRLRGETASFDIEADGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKD
YINEATGEIIVTANQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTL
DETDIVEVMKKLIAIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIEEGQFVIAQANAALTEEGTFADELITARQKGESGLHPREHAQYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNVAVDSGVTAVAKR
GGVIQSVDASRIVVKVNEEELVPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVSRG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFQILEGGLLNRVKAVLIEGGYSEAKLESTERKKWLELTLEDDALQTQLEQLAEQWDE
LKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGETRQKVDVASLSDDEVRTLIKNLRGGLPIATPVFDGASEHLIKELLKL
ADLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGSHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gttttggacattccatacctgctatcgatccagctcgattcgttcgacaaatttatcgaa
caggatcctgaaggtcaatacggtcttgaagccgctttccgttctgtatttccaattcag
agctacaacggcaattctgagctgcaatacgttagctaccgtcttggtgagccagttttt
gacgttaaagaatgtcaaatccgcggtgtaacttactcaaagccactacgtgtaaaacta
cgcctagttatctttgataaagacgcgccagcaggtactgtaaaagacattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtaccttcgtaatcaacggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtgttcttcgacagcgat
aagggtaagacccactcatcaggtaaagttctatataacgcacgtgttattccttaccgt
ggttcatggcttgatttcgagtttgatcctaaggataacctgtacgtacgtatcgaccgc
cgtcgtaagctaccagcatcgatcatccttcgtgcactaggtaaatcgactgaagaaatc
ctagatatcttcttcgagaaagtgaacttcgaagtgaaagaccaaactctactgatggag
ttggttcctgatcgtctacgcggtgaaactgcgtcattcgacatcgaagcagatggtaaa
gtttacgttgagcaaggtcgtcgcgtaacggctcgtcatatccgccaactagaaaaagat
ggcgttgatcacatcgaagtacccgttgagtacatcgttggtaaagttgcatcgaaagat
tacatcaacgaagcaacaggcgagatcattgttactgctaaccaggaaatcagcctggaa
gcactagcgaacctatctcaggctggccacaaagcgctagaagttctgtttacgaacgat
ctagaccacggtccattcatgtcagaaacactacgtatcgacagcactgttgatcgtatt
tctgcattggtagaaatctaccgcatgatgcgccctggtgagccgccaacaaaagaagct
gcagaagcactattcgaaagcctattcttctctgaagagcgttacgatctatcgactgtt
ggtcgtatgaagttcaacagctctatcggtcgtgaagatgctcaagagcaaggcacacta
gacgaaactgatatcgtcgaagtgatgaagaagcttatcgcgatccgtaacggtaaaggc
gaagtggacgatatcgaccacctaggcaaccgtcgtatccgttctgtaggcgaaatggct
gagaaccagttccgtgtaggtctagtacgtgttgagcgtgcagttaaagagcgtctaagc
ctaggcgatcttgatgctgttatgcctcaagacctgatcaacgcgaagccaatttctgca
gcagttaaagaattctttggctcttcacagctttcacagttcatggaccaaaacaacccg
ttatcagaagtaacgcacaagcgtcgtatttctgcattgggtcctggcggtctgactcgt
gaacgtgctggcttcgaagtacgtgacgtacacgtaactcactacggtcgtctatgtcct
atcgaaacgcctgaaggtccaaacatcggtctgatcaactctctatctgcgtttgcgcgt
tgtaacgagtacggtttcctagagactccataccgtcgcgttgtagatggcgttgttaca
gacgaagtagattacctatctgcaatcgaagaaggccaattcgttatcgcacaggctaac
gctgcgttgactgaagaaggtacgtttgcagatgagctgatcacagctcgtcagaaaggt
gaatctggtctacaccctcgtgagcacgctcagtacatggacgttgcgacaaaccaggtt
gtatctatcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagttccaacactgaaagctgacaaaccgcttgtt
ggtactggtattgaacgtaacgtagccgttgactcaggtgtaactgcagttgcgaaacgt
ggtggtgtaatccagtcagtagatgcttctcgtatcgttgttaaagtgaacgaagaagag
ctagtaccaggcgaagctggtatcgacatctacaacctgactaaatacacacgttctaac
cagaacacatgtattaaccagcgcccatgtgtgatgccaggtgaacctgtatcacgcggc
gacgtacttgctgatggtccttcaacagaccttggtgagctagcgcttggtcaaaacatg
cgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgcttcacgacaatccacattcaagaactgacttgtgtggca
cgtgatactaagctgggctctgaagagatcacagcggatattccaaacgtaggtgaatct
gctctgtctaaactagacgagtcaggtatcgtttacattggtgctgaagttaagggtggc
gacatcctggttggtaaagtaacacctaaaggtgaaactcagctgactcctgaagagaag
ctactacgtgcgatcttcggtgaaaaagcatctgatgttaaagatacgtcactacgtgta
ccgaactctgtatcaggtacgatcatcgacgttcaagtcttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaatcgaacagatgcagcttaaagaagcgaagaaagaccta
actgaagaattccagattcttgagggtggccttctaaaccgtgttaaagctgttctgatt
gaaggcggttactctgaagcgaaactagagtctactgaacgtaagaagtggctagagcta
acgctggaagatgacgcactacaaactcagctagagcaacttgctgagcagtgggacgag
ctaaaagctgacttcgataagaagttcgaaactaagcgtcgtaagatcactcaaggtgat
gatctagcacctggcgtactgaagatcgttaaggtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggccggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccatacgatgaaaaaggtcagcctgtagacatcgtacttaaccca
ctgggtgtaccttcgcgtatgaacatcggtcagatcctagaagttcacttaggtctggca
gcgaaaggtatcggtgacaagatcaaccagatggttaaagagcagcaagaactagcgaaa
ttccgcgagttcctacaaaaagtttacgatctaggtgagactcgccagaaagtagacgtt
gcttctctgtctgatgatgaagttcgtacactgatcaagaacctgcgtggcggtctacca
atcgcgacgccagtatttgacggtgcttctgagcatctaatcaaagagcttctaaaacta
gcagacctaccaacatctggtcagctaacgctgtttgatggtcgcacaggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgctgaaactgaaccaccttgttgatgac
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacactctacaagaaatgctaaccgttaagtcggatgacgttaacggccgt
actaagatgtacaagaacatcgtagacggaagccacagcatggaacctggtatgccagaa
tcgttcaacgtattgttgaaagagattcgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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