Vibrio nigripulchritudo: VIBNI_A2845
Help
Entry
VIBNI_A2845 CDS
T02871
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase hrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_A2845 (hrpB)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VIBNI_A2845 (hrpB)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VIBNI_A2845 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CCO58886
UniProt:
U4K8G4
LinkDB
All DBs
Position
1:complement(3028931..3031381)
Genome browser
AA seq
816 aa
AA seq
DB search
MSQLPIESVLPELLSGVRLKQQVVLKAEPGAGKSTHLPLQLVKQNVVSGKIIMLEPRRLA
ARNIAHYLASQLGEKVGETVGYRVRGETKASKHTRLEVVTEGILTRMIQSDPELDGVSLV
IFDEFHERSIHADTSLSFCLEIQEALREDLTLLVMSATLDESALTRLLPEAAYIESEGRG
YPIEYRYAPMSVNDRLATSVTKQIQSLLANESGSILVFLPGAEAINQVKENLGELDSNTD
VHPLYGQLNFSEQQKAISPPEQGKRKVVLATNIAETSLTIEGIRIVVDSGLKRFASFQLK
TGITKLEQQRIAQSSAHQRAGRAGRLEAGICVRLYSEQQLLQQPKIPTPEILRTDLSSVM
LEMLQWGNSEFSPQHWLDVPTQSSISAATDLLTQLGLTDAESKLTELGIQAQSLGTDPRM
AAMLLKARQESGEHLSTAMAMVALIEEPERSSDSLIHSAQRFKDGRHQHQHKVKTRISAL
NTRLGVQPAAFKFDELLSGTCLCWAFPDRIAKQRSAGGENYLLANGHGAQVDLLSSLSQN
EFLVVVDLMKGRNSDSKIHFACPLDSLPEHLIKQGVFVYWDDQKGELIAEARTSIGAIVL
EAKPTKEITEEQKSQALLNHIKLNGLDVLCWSDKGSGLLNRIRCAREWLSEESWPDVSDS
GLVENLDKWLLPFMNGVSNMKALKKVDMYQALNAYLGWPLNQSIDEWLPERYPLPTGQTR
EICYQEGKPPHLSARVQEVFGEQASPRIAKGKIAVTLELLSPARRPIQITQDLAAFWQGS
YHEVKKEMKGRYPKHPWPDDPANHEATTKTKRQLNS
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagctcccgatagaatctgtgttgcctgaactactcagcggggttcgtttaaaa
cagcaggttgttttgaaagccgagcccggcgcaggtaagtccactcatttgcctttacaa
ctggtaaaacagaatgttgtgagtggaaaaatcatcatgcttgagcccagaaggcttgca
gcgcgaaatatcgctcactatcttgcgtctcagctcggtgaaaaagtcggagaaaccgtc
gggtaccgcgtgcgaggtgaaaccaaagcgagtaaacacactcgactggaagtggtaacg
gaaggcattttgacccgaatgatccagtctgacccagagctggatggggtctcactggtg
atatttgatgagtttcatgaacgcagcattcacgccgacaccagcctgtcgttctgtctg
gagattcaggaagctctgcgtgaagacttaactttgctggttatgtctgccacgttggat
gagtctgcgttgaccagattgcttccggaagctgcatatattgaatcagaagggcgcggt
tatcccattgaatatcgttacgcccccatgtcggtgaatgaccgattagcgacttctgta
accaagcaaatccaatccttactggctaatgagtcgggctcgatactggtttttttaccg
ggtgcagaggcgattaatcaggtgaaagagaatcttggcgaactggatagcaacaccgat
gttcatccattgtacgggcaactgaatttttccgagcagcaaaaagccatctctccacct
gaacagggcaagcgaaaggtcgtactggcaaccaatattgccgaaaccagtctgactatc
gaaggcatccgaattgtggtcgacagtgggctaaagcgttttgcttctttccagctcaaa
acgggtattaccaagctggagcaacagcgtattgcgcagtcttcagctcatcaaagggcg
gggcgtgcgggtcgattggaagccggaatctgcgtgcgcctgtacagcgagcagcaattg
cttcaacaaccaaaaattcctacaccagaaattctccgaacggatttgtcttctgtgatg
ctggaaatgcttcagtgggggaacagtgaattttcaccgcagcactggctggacgtacca
actcagtcttcgatttctgctgcaacggatcttcttactcaactgggtcttacggatgcg
gaaagcaagttgacggagctgggtattcaggcgcagtcactcggaaccgatcctagaatg
gcggctatgttactcaaagcacgtcaagaaagcggtgaacatttgagtaccgctatggcg
atggtggcgttgatagaagagcctgaaagaagcagcgacagtctgattcactcagctcag
cgctttaaagacggacgtcaccaacatcaacacaaagttaaaacgagaatctcagctctg
aacaccagactaggtgttcaacctgccgctttcaaatttgatgaacttttatcgggcaca
tgcctttgttgggcgtttcctgaccgaatcgcgaaacaaagatcggcaggaggggaaaat
taccttctggcgaacgggcatggtgcgcaggtggatttgctttcctcgttgagtcaaaac
gaatttttagtggttgtcgacctgatgaaagggcgaaacagcgacagtaaaatccatttt
gcttgcccccttgattcccttccagaacacctgataaaacaaggcgtgtttgtttattgg
gacgaccaaaaaggggagcttatagcggaagcacgcacttctatcggtgcgattgttctg
gaagcgaaaccaacaaaagagataacggaagagcagaaatcacaggctctgctgaatcat
atcaagctaaatgggttggatgtgttgtgctggtcagacaaaggctcggggttactgaac
cgaattcgctgtgctcgcgagtggctctcagaagaatcttggccagatgtctcagattcc
ggcttagttgaaaatctcgataagtggttgttgccatttatgaatggggtttctaacatg
aaggcgttaaaaaaagtggatatgtatcaggcactcaatgcgtatttgggatggcctttg
aatcagagtattgatgaatggctccctgagcgttacccacttccgactgggcagacacgt
gagatttgctatcaggaaggaaagcctccgcacctttctgccagagttcaggaagtgttt
ggggaacaggcatctcccagaatagccaaaggaaaaattgccgtaacgttagaactgttg
tctcccgcaaggcgacctattcaaataacccaagacttagcggcgttttggcaagggtct
taccatgaagtcaaaaaagaaatgaaagggcgataccctaaacacccatggccagatgat
ccggctaatcacgaagcaaccacaaaaaccaagcgacaactgaattcatga
DBGET
integrated database retrieval system
