Vibrio ostreae: KNV97_11875
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Entry
KNV97_11875 CDS
T08661
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vos
Vibrio ostreae
Pathway
vos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KNV97_11875 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vos03400
]
KNV97_11875 (sbcB)
Enzymes [BR:
vos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KNV97_11875 (sbcB)
DNA repair and recombination proteins [BR:
vos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KNV97_11875 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KNV97_11875 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KNV97_11875 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QXO18911
UniProt:
A0A975UDV0
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All DBs
Position
1:1270687..1272132
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AA seq
481 aa
AA seq
DB search
MKDTAPHQQQDHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDKDFNIIGEPLVIYCQLPS
DYLPGPEAALITGITPQKAMSQGLPEPEFIARIHQELSTPNTTSLGYNSIRFDDEVTRYT
CYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPQGIEWPENEDGFTSFKLEHLSKANGI
EHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRTKRKLNELIDIVNMTPLMHVSGM
LGRECQYTSWVVPVAWHPTNQNAAIVVDLAKDPQPLLDLDVDALHARMYTRHDELGPDEL
PVPVKLIHLNKCPILAPAKTLTAENADQIGIDRQQCLANLALIRQHPEIREKLIGLFNIE
REFDNNHDVDTQLYNGFFSPTDKASMDIIRSTNPEFLGELGITFSDPRIEPLLFRYRARH
YPWTLNESEQRRWNAHCREYFETHLPDYMLNLENLVHEHESDSKKIAILKSVYQYVEKLA
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacaccgcaccccaccagcagcaagatcatcaaccgacattcttctttttcgac
tacgaaacctggggcaccagtccggcgaaagacagaccaagccagtttgctggcgtacgt
accgataaagatttcaatatcattggtgaaccactggtgatttactgtcagttacccagt
gattacctgcctggtccggaagcggcgctgatcacgggcatcactccacagaaagcaatg
tcacaaggcctgcctgaacctgaatttattgcccgtatccatcaggaactgtcgaccccc
aacacgaccagtctgggctataacagcattcgttttgatgacgaggtaacccgttacacc
tgctaccgcaacttctttgacccttatgcctggagctggcaaaacggtaattcacgctgg
gatctgctggatgtaatgcgagcctgtcatgctcttcgtcctcagggtatagaatggccg
gagaatgaagacggtttcaccagctttaagcttgagcacttatccaaagccaacggtatc
gagcatgagaacgcccacgatgcaatggcagacgttatcgcgactatcgagctggctaag
aaagtgaaagccgcccaacccaaactgtttgattatttctactcgatgcgaaccaagcgc
aagctgaatgaactgatcgacatcgttaatatgacgccgctgatgcatgtttccggcatg
ctgggacgtgagtgccagtataccagttgggtcgtccccgttgcctggcatccgactaac
cagaacgccgccatcgttgttgatctggccaaagatccacagccactgctcgacttagat
gtcgatgctctgcacgcccgtatgtatacacgacacgatgaactgggcccggatgaactg
ccggtaccggtcaaattgattcatctgaataaatgtccgattctggcgccagccaaaacc
ctgacggcagaaaatgccgatcagattgggattgatcgtcagcagtgtctggctaatctg
gcactgattcgtcaacatccggaaatcagggaaaaactgattggcctgtttaatattgag
cgcgaattcgataacaatcacgatgtggatacccagctttacaatggtttcttctcaccc
accgacaaagcgtcgatggatatcatccgctcaacgaaccctgagtttctgggagagctg
ggcatcacattcagtgacccgagaattgaacctttgctgttccgttaccgtgcccgccac
tacccatggacactaaacgaaagcgaacagcgtcgctggaacgcacattgccgggagtac
tttgaaactcatctgcccgactatatgctgaacctggaaaacttagttcacgaacatgag
agtgacagcaaaaaaatagccatattaaaatctgtctatcaatatgtagaaaaactagcc
agttag
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