Vibrio parahaemolyticus RIMD 2210633: VP2062
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Entry
VP2062 CDS
T00120
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VP2062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VP2062
03009 Ribosome biogenesis [BR:
vpa03009
]
VP2062
Enzymes [BR:
vpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VP2062
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VP2062
Ribosome biogenesis [BR:
vpa03009
]
Prokaryotic type
rRNA processing factors
VP2062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAC60325
UniProt:
Q87N14
LinkDB
All DBs
Position
1:2161432..2164503
Genome browser
AA seq
1023 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIQLVRPDFINRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEFDLISYLLPKKLEAMKEAEGKEPSETDIKPKRIEEPVLKGFAAPAQTA
PAPVSKPAPVAKKKEVEQEAKPGLFSRLFKALGSFLFGGSEEVKEEPKQEEKKSNRDNKR
NKRDRNDRRRSNQRDNREGRENRDNRRRRKPREEQANEQNEAQQPANKQQPNRSQKRKPK
PQQAEKAQEPKANAKVAEKGLQLAAEARSEVKPEENKAKANAKTEKVKERRQRRKLNKSV
RVKDQLADEQVEETAVKAIEPVESQVDQAVDTAADAQQDNKQGESKQRRNRRSPRHLRAS
GQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEERVQEETVVAIATVP
AMQGGFACPEMAMGKVIIRREQPAVAEAPVVEPKVQETVEAKAESPIVEAVAPEKAEPVA
VDQAPVEPIVEVAEAPVAEATTETVVEEAPVQEPVVAETVEEAATEVAVETPVAAPEMKA
EVINVVAKPRASAPMTKAPGPQELREIEVAAAPFKAERYQAKGAGSQVATNRASAAMTKP
NFN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccaggacatgaatctaaaaaagcgaat
atctacaaaggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattac
ggtgctgagcgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacctaccaaggccgtccaagcattaaagaagtgctgactgagggccaagaagta
atcgtacaggtagaaaaagaagaacgtggtagcaagggcgcagctctaaccacgtttatt
tctcttgcgggtagctaccttgttcttatgccaaacaaccctcgtgcaggcggtatttct
cgccgtatcgaaggtgatgagcgtactcaactaaaagcagcattaagcactctagaactg
cctcaaggcatgggtctgattgttcgtactgctggtgttggtaagagcgcagaagaactt
gagtgggacttgaacgtactgctgaaccattggagcgcgattaagggcgcggcagactct
aaccctgccccattcttaatccaccaagaaagtaacgttatcgttcgtgcaattcgtgac
tatttgcgtcgtgatattggtgaaattcttatcgacagcaacaccatttatgaacgtgcg
aaagagcacattcaattggttcgcccagatttcatcaaccgcgttaagaagtacgaaggc
gaagtgccgctgtttagccactaccaaatcgagagccaaattgaatcggctttccaacgt
gaagtgcgcctaccatctggtggttctatcgtaatcgacccaacggaagctctgacgtct
atcgatatcaactctgctcgtgcaactaagggtggtgatatcgaggaaacagcacttaat
accaacctagaagcagcagacgagatcgctcgtcaattgcgtctacgcgacttaggtggt
ctagtggttatcgactttatcgatatgacaccagtgcgccaccaacgtgaagtagaaaac
cgcctacgtgaagcagttcgattagaccgtgctcgcgtacaaatcggtcgtatctcacgc
tttggtcttctagagatgtctcgtcaacgattgagcccttctcttgcagaagcaagccac
cacatttgtcctcgctgtagcggcacaggtgttgttcgtgacaacgaatctctagcactt
tctgttcttcgtttgattgaagaagaagcactaaaagacaacacagctcaagtattggct
gtagtaccagtgccaatcgcatcttacctattgaacgaaaaacgtcgctcggttaaccat
atcgaacgaattcaagaagtgaaaattacggttgttccgaactcagacatggaaacaccg
cactttgaagtaattcgcgtacgcgaaggtgaagagtttgatttaatttcttacctactt
cctaagaagttggaagcaatgaaagaagcagaaggtaaagaaccttctgaaacagacatc
aaacctaagcgaatcgaagagcctgttcttaagggctttgcagcgccagctcaaaccgct
ccagctcctgtttctaaacctgcgccggtagcgaagaagaaagaagtagagcaagaagca
aaacctggcctattcagccgtttgtttaaagcactaggtagcttcctatttggtggttct
gaagaagtaaaagaagaaccaaaacaagaagagaagaaatcaaaccgcgacaacaagcgc
aacaaacgcgatcgcaacgaccgtcgtcgtagcaaccaacgcgataaccgcgaaggtcgt
gaaaaccgtgataaccgtcgtcgccgtaagcctcgtgaagagcaagcaaatgagcaaaac
gaagctcaacagcctgcaaacaaacagcaaccaaaccgtagccagaagcgtaagccaaaa
cctcaacaagctgaaaaagctcaagagccgaaagcaaacgcgaaagtagcggaaaaaggc
ttgcaacttgcggctgaagctcgctcagaagtgaagcctgaagagaataaagcgaaagca
aacgcgaaaacagagaaagtcaaagagcgccgtcaacgtcgcaaactgaacaaatctgtt
cgtgttaaagatcaacttgccgatgagcaagtagaagaaacagcagtaaaagcaattgaa
cctgttgagtctcaagtagatcaagccgttgatacagcagcagacgcgcagcaagacaac
aagcaaggtgaatcgaaacaacgtcgtaaccgtcgttctcctcgtcacctacgagcaagt
ggtcaacgtcgtcgtcgtggtcgtgatcgtcgtcctaacccattccgtctgcgcaaaggc
ggtgtagcatctcctgagatggcaatgggtaaagtgatgccacgttacattccaaaacca
gcgcctaagaaggaagagcgagttcaggaagaaacggttgtggcaattgcaactgtacct
gctatgcaaggtggttttgcttgccctgaaatggcaatgggtaaagtcatcatccgtcgt
gagcaaccagcggtagctgaagcacctgttgttgaacctaaagttcaagaaacagtagaa
gctaaagctgaatcaccgattgttgaagctgtagcgcctgaaaaggcagagccagtagcg
gttgatcaagctcctgtagagccgatcgttgaagtggctgaagcacctgttgcggaagca
acaacagaaacagttgttgaagaagctccggttcaagagccagtcgttgcagaaactgtg
gaagaagcagcaacagaagttgccgttgaaactccagtagcagcgccagagatgaaagct
gaagttatcaacgttgttgctaagccacgagctagcgcaccaatgacaaaagcacctggc
cctcaagaactacgtgaaatcgaagtagccgcagcgccgtttaaagctgaacgctaccaa
gctaaaggtgctggtagccaagtggcaacaaaccgcgcctctgcagcaatgacaaagcca
aacttcaactaa
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