KEGG   Variovorax paradoxus B4: VAPA_1c05040
Entry
VAPA_1c05040      CDS       T02835                                 
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit HolA
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03030  DNA replication
vpd03430  Mismatch repair
vpd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VAPA_1c05040 (holA)
   03430 Mismatch repair
    VAPA_1c05040 (holA)
   03440 Homologous recombination
    VAPA_1c05040 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vpd03032]
    VAPA_1c05040 (holA)
   03400 DNA repair and recombination proteins [BR:vpd03400]
    VAPA_1c05040 (holA)
Enzymes [BR:vpd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VAPA_1c05040 (holA)
DNA replication proteins [BR:vpd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VAPA_1c05040 (holA)
DNA repair and recombination proteins [BR:vpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VAPA_1c05040 (holA)
SSDB
Motif
Pfam: DNA_pol3_delta DNA_pol3_delt_C DNA_pol3_delta_C
Other DBs
NCBI-ProteinID: AGU47634
UniProt: T1X5N9
LinkDB
Position
1:547019..548107
AA seq 362 aa
MQLASAQLGSHLQKGLKSLYTIHGDEPLLAQEAADAIRTAARVAGYTERSSYTVAGAHFD
WSAVLAAGGSLSLFADKQIVEIRIPSGKPGKDGSTALQQLAEAARDNDSTLTLVMLPRLD
KATRTGAWFSALENNGVSLQVDPIERAALPQWIAQRLGLQGQRVMPGDEGQRTLQFFADR
VEGNLLAAHQEIQKLALLHPAGELSWEQVEGAVNNVARYDVFKLSEAVLAGNPQRVARML
DGLQAEGEAEVLVHYTIAEDIRALKRVKDAMAAGRPLPMALRENRIWGPRERAFERVLPR
LDDRMLARLLRAAHVVDGICKGLKQPDWPASGWQALQRLALMLCRACSSAALAPSPSGRG
LG
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaacttgccagcgcccaactgggctcccatctgcagaaggggctgaagtccctctac
acgatccacggcgacgagccgctgctcgcgcaggaggcggcggacgccatccgcaccgcg
gcacgcgtggcgggctatacggagcgcagctcgtacaccgtggccggcgcgcacttcgac
tggagcgcggtgcttgcggcgggcggctcgctctcgctgttcgccgacaagcagatcgtc
gagatccgcattccctcgggcaagcccggcaaggacggcagcacggcgctgcagcagctg
gccgaggccgcgcgggacaacgacagcacgctcacgctggtgatgctgccgcggctcgac
aaggccacgcgcaccggcgcctggttctcggcgctcgagaacaacggcgtgagcctgcag
gtcgatccgatcgaacgcgccgcgctgccgcagtggatcgcgcagcgcctgggcctgcag
ggccagcgcgtgatgcccggcgacgaaggccagcgcacgctgcagttctttgccgaccgc
gtcgagggcaacctgctcgccgcgcaccaggaaatccagaagctcgccctgctgcatccg
gcgggcgagctgagctgggagcaggtcgaaggcgcggtcaacaacgtggcgcgctacgac
gtgttcaagctctccgaggccgtgctggccggcaacccgcagcgcgtggcgcgcatgctc
gacggcctgcaggccgaaggcgaggccgaggtgctggtgcactacacgatcgccgaggac
atccgcgcgctcaagcgcgtgaaggacgccatggccgcgggccggccgctgcccatggcc
ctgcgcgagaaccgcatctggggcccgcgcgagcgcgccttcgagcgcgtgctgccccgg
ctcgacgaccgcatgctggcccggctgctgcgcgcggcccatgtggtggatggcatctgc
aaggggctgaagcagcccgactggcccgccagcggctggcaggccctgcagcgcctggcg
ctgatgctgtgccgcgcctgcagcagcgctgctcttgctccctctccctccgggagaggg
ttggggtga

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