Variovorax paradoxus B4: VAPA_1c27570
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Entry
VAPA_1c27570 CDS
T02835
Name
(GenBank) putative cytidine/deoxycytidylate deaminase
KO
K01563
haloalkane dehalogenase [EC:
3.8.1.5
]
K11991
tRNA(adenine34) deaminase [EC:
3.5.4.33
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00361
Chlorocyclohexane and chlorobenzene degradation
vpd00625
Chloroalkane and chloroalkene degradation
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00625 Chloroalkane and chloroalkene degradation
VAPA_1c27570
00361 Chlorocyclohexane and chlorobenzene degradation
VAPA_1c27570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c27570
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.33 tRNA(adenine34) deaminase
VAPA_1c27570
3.8 Acting on halide bonds
3.8.1 In carbon-halide compounds
3.8.1.5 haloalkane dehalogenase
VAPA_1c27570
Transfer RNA biogenesis [BR:
vpd03016
]
Prokaryotic type
tRNA modification factors
Deaminases
VAPA_1c27570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MafB19-deam
dCMP_cyt_deam_1
Bd3614-deam
Abhydrolase_1
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AGU49854
UniProt:
T1XC02
LinkDB
All DBs
Position
1:complement(2926733..2927842)
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AA seq
369 aa
AA seq
DB search
MTTEPASKPMDDAHWMALALAEARLAAEAGEVPVGAVLVRNGQFVATGRNTPVAQHDPSA
HAEINALRAGAAALGNYRLDGCELFVTLEPCAMCAGAMLHARLARVVYGAADPKTGAAGS
VLDLFAEPRLNHRTQVQGGVLAAECSAVLQAFFQQRRDAAREQAEPLRDDALRTPVERFD
ALADYAFEPRYVQDLPSLQGWRMHYLDEGPQDGSAAACLCLHGPGEWGYFFRHLVGAPGL
RTLVPDLIGFGKSDKPKREAAHRLEWHCQVLNEWLDRMQPAPMVLVHSAAATGLATRLQA
GRGGLFAAVLLAPEGGEPVDDAWRAPFPDRGYQAALRALGPMASSSGPSVQQAALLAREV
RNAMGYSTP
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgagcccgcttccaagcccatggacgatgcgcactggatggcgctcgcgctg
gccgaggcgcgcctggcggccgaggcaggcgaggtgccggtcggcgcggtgctggtcagg
aacgggcagttcgttgccaccgggcgcaacacgccggtcgcgcagcacgacccgagtgcc
catgccgagatcaacgcgctgcgcgccggcgccgccgcgctcggcaactaccggctcgac
ggctgcgagctgttcgtcacgctcgagccctgcgcgatgtgcgcgggcgccatgctgcat
gcgcggctcgcgcgcgtggtgtacggtgcggccgaccccaagaccggcgcggccggctcg
gtgctcgatctctttgccgaaccccggctgaaccaccgcacgcaggtgcaaggtggcgtg
ctggccgcggagtgcagcgcggtgctgcaagctttcttccagcagcgccgtgacgcggcg
cgcgaacaggccgagcccttgcgcgacgatgcgctgcgcacgccggtggagcgcttcgac
gcgctcgccgactacgcctttgaaccgcgctacgtccaggacctgcccagcctgcaaggc
tggcgcatgcactacctcgacgagggtccgcaggacggctccgccgccgcttgcctttgc
cttcatggtcccggcgaatggggctactttttccgccatctcgtcggtgcgcccgggctg
cgcacgctggtgcccgacctgatcggtttcggcaagagcgacaagcccaagcgcgaagcg
gcgcaccggctcgaatggcactgccaggtcctgaacgaatggctcgaccgcatgcagccg
gcgccgatggtgctggtgcacagcgccgcggccaccgggctcgccacgcggctgcaggcc
ggaaggggcggcctgtttgcagccgtgctgctcgcgcccgaaggcggcgagccggtggac
gatgcatggcgcgcgccgttccccgaccgcggctaccaggccgccctgcgcgcgctcggg
cccatggcgtcgtcctccggcccgagcgttcagcaggctgcgctgctcgcccgggaggtg
cgcaacgcaatgggatactcgacgccgtga
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