Vibrio paracholerae: SA104470976_01868
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Entry
SA104470976_01868 CDS
T08432
Symbol
ygdH
Name
(GenBank) decarboxylase family protein
KO
K06966
pyrimidine/purine-5'-nucleotide nucleosidase [EC:
3.2.2.10
3.2.2.-]
Organism
vpl
Vibrio paracholerae
Pathway
vpl00230
Purine metabolism
vpl00240
Pyrimidine metabolism
vpl01100
Metabolic pathways
vpl01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
SA104470976_01868 (ygdH)
00240 Pyrimidine metabolism
SA104470976_01868 (ygdH)
Enzymes [BR:
vpl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.10 pyrimidine-5'-nucleotide nucleosidase
SA104470976_01868 (ygdH)
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Gene cluster
GFIT
Motif
Pfam:
PpnN_C
DUF4478
Lysine_decarbox
LDcluster4
Glycos_transf_2
Peptidase_M57
Motif
Other DBs
NCBI-ProteinID:
SYZ81970
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All DBs
Position
1:2034725..2036083
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AA seq
452 aa
AA seq
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MIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELLDKYKN
FDITVMRRERGIKLELANPPEHAFVDGQIIKGIQEHLFAVLRDIVYVNMHLADSQRLNLT
NATHITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICT
GCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDIEKRLE
AFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFI
TDTLGEAARKHYSIVIDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPEFQLPF
EPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAGNVKAEGIREIERHGPFEMHGDPVLM
KKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgattattcaagtcagcccagccggcagtatggatctactgtcgcaactcgaagtcgaa
cgtctgaaaaagaccgcctcgagtgatctctaccagctttatcgcaattgcagccttgcc
gtgttgaactcaggcagccacacggataactcgaaagagctgctcgataaatataagaat
ttcgatatcaccgtcatgcgccgcgaacgcggtatcaagcttgagctggcgaatcccccc
gaacatgcctttgtcgatgggcaaatcatcaaaggaattcaagagcacttatttgccgtg
ctgcgcgatattgtttacgtcaatatgcatttagccgatagccagcgccttaacctgact
aacgcgacgcacattactaacctcgtgtttggtattttgcgcaatgccggagcactgatt
cccggagcgacacccaatctcgttgtatgctggggtggacattcaattaatgaagttgaa
taccaatacactcgcgaagtcggccatgagctcggtttacgtgaactgaacatctgtacc
ggttgtggtcccggtgcgatggaaggcccaatgaaaggtgcggcggtcggccacgccaaa
cagcgttattcggaataccgctacctcggattgaccgaaccttcaattattgccgccgag
ccgcccaaccctatcgttaatgagctggtgatcatgccagatatcgaaaaacgtttggaa
gcgttcgtgcgtatggcacatggcatcatcattttccccggaggtccaggtacggcagaa
gagctactgtatatcttgggcattatgatgcacccagaaaacgccgatcagccaatgcct
attgtgctgacagggccaaaacagagtgaagcgtatttccgctctttggataaattcatt
accgataccttgggtgaagccgctcgtaagcattacagcatcgtcatcgataatccagcg
gaagcggcacgtattatgagtaatgctatgccactggtgcgtcaacatcgtaaagataaa
gaagatgcgtacagctttaactggtcactcaaaattgagccggaattccaactgccgttt
gagccgaaccacgaaagcatggcgaaccttgatttgcacttaaatcaacgcccagaagtg
cttgccgccaatctgcgtcgcgccttctctggcgttgtggcaggcaacgtcaaagcggaa
gggatccgtgaaattgaacgccacggtccctttgaaatgcatggtgacccagtgttaatg
aaaaaaatggatcagctactcaatgatttcgtcgcccaaaaccggatgaaacttccaggc
ggcagcgcatacgagccttgctataagatagtgacttaa
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