Vibrio paracholerae: SA104470976_02502
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Entry
SA104470976_02502 CDS
T08432
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl00540
Lipopolysaccharide biosynthesis
vpl01100
Metabolic pathways
vpl01250
Biosynthesis of nucleotide sugars
Module
vpl_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
SA104470976_02502 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
vpl01005
]
SA104470976_02502 (rfaD)
Enzymes [BR:
vpl01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SA104470976_02502 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
vpl01005
]
Core region
SA104470976_02502 (rfaD)
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
ThiF
KR
NAD_binding_10
adh_short
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
SYZ82547
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All DBs
Position
1:2705711..2706655
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AA seq
314 aa
AA seq
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MIIVTGGAGMIGSNIIKALNERGINDILVVDHLKNGRKFKNLVDLQIADYMDRDDFLAQI
MAGDDFGPIDAIFHEGACSATTEWDGKYVMLNNYEYSKELLHYCLDREIPFLYASSAATY
GETDTFIEEPQYEGALNVYGYSKQQFDNYVRRLWLDAKQHGETLSQITGFRYFNVYGPRE
QHKGSMASVAFHLNNQMNAGENPKLFAGSEHFKRDFVYVGDVAAVNLWFLDHGVSGIFNC
GTGKAESFNEVAKAVIAFHGRGEVETIPFPDHLKGAYQEFTEADLTKLRAAGCDVQFKKV
AEGVAEYMALINRK
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgttactggcggcgctggcatgattggcagcaacattatcaaagcgcttaat
gagcgtggtatcaatgacattctggtcgtcgatcatttgaaaaatggtcgtaagttcaaa
aatctggttgacctacagatcgccgattacatggatcgagatgacttccttgctcagatc
atggccggtgatgactttggacccattgacgccattttccatgagggagcttgctctgcc
actactgaatgggatggcaaatatgtcatgctcaacaactatgaatactctaaagagctg
ctgcactactgtttagatcgtgaaatacccttcctttacgcttcttcggcagccacttat
ggcgaaaccgatacctttattgaagagccgcagtatgaaggtgcactcaacgtttacggc
tattcgaagcagcaatttgataactatgtacgccgcctatggctagatgcaaaacaacac
ggtgaaaccttatcgcaaataacggggtttcgttacttcaacgtatacggccctcgtgag
cagcataaaggctcgatggcttcggttgcctttcatttgaacaatcaaatgaacgcgggt
gaaaatccgaaactgtttgcaggtagtgagcacttcaaacgtgatttcgtgtatgtcggc
gatgtcgcggcggtcaatttgtggtttttagatcatggcgtatccggcattttcaactgt
ggtacaggtaaagcggaatcgttcaacgaagtggcgaaagcggtgatcgcattccatggt
cgtggcgaagtcgaaaccattccattcccagaccatcttaaaggtgcttaccaagagttt
accgaggctgaccttaccaaacttcgcgctgctggctgtgatgtacagttcaaaaaagtg
gctgaaggcgtcgctgaatatatggcgctgattaatcgtaagtaa
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