Virgibacillus dokdonensis: A21D_01272
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Entry
A21D_01272 CDS
T05261
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A21D_01272 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpn03021
]
A21D_01272 (rpoA)
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_01272 (rpoA)
Enzymes [BR:
vpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A21D_01272 (rpoA)
Transcription machinery [BR:
vpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A21D_01272 (rpoA)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A21D_01272 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
DUF961
HTH_11
Dockerin_1
TmoB
Motif
Other DBs
NCBI-ProteinID:
AUJ24371
UniProt:
A0A2K9J2X1
LinkDB
All DBs
Position
complement(1361098..1362042)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVEISDDATFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSVQIDG
ALHEFSTIDGVVEDVTTIILNLKKLALKIYSDEEKTLEIDVQGEGKVTAADLTYDSDVEV
LNPDLLIATLNNKGSLYMKITAERGRGYRPAEANKRDDQPIGIIPVDSIFTPVSRVTYQV
ENTRVGQVANFDKLTLDVRTDGSIRPEEAVSLGAKVFTEHLNIFVGLTDEAKNAEVMVEK
EEDQKEKVMEMTIEELDLSVRSYNCLKRAGINTVQELANKSEEDMMKVRNLGRKSLEEVK
VKLNDLGLGLRDDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaattgaaaaaccaaaaattgagacggtagaaatcagcgatgatgctacattt
ggaaaattcgtagtcgaaccgcttgaacgtggatatggtaccactctaggaaactccttg
cgtcgtatcctactatcctcacttccaggtgctgctgtgacttcagttcaaattgatgga
gcgctacatgaattttcaacgattgatggtgttgttgaagatgtaacaacaattattttg
aacttgaaaaaattagcgctaaaaatctactcagatgaagaaaagacattggagattgat
gtgcagggagaaggaaaagttacggctgcagatctaacctatgatagtgatgtagaggtc
ctaaatccggatttgttaattgctacattgaataacaaaggcagcttgtatatgaaaatt
actgcagaacgtggacgcgggtatcgacctgctgaagcaaacaaacgtgatgatcagcca
atcgggataattccagttgactccatttttactccagtatcacgtgtaacctaccaagta
gagaatacacgtgttggtcaagtagctaactttgataaattgacattagatgtacgtaca
gatggcagtattcgtccagaagaagctgtttctttaggtgcgaaagtctttacagagcat
cttaatatttttgtaggtttaacagatgaagcgaaaaacgctgaagttatggtcgagaag
gaagaagaccaaaaagaaaaagtgatggaaatgacgatagaagaacttgatctttctgtc
aggtcctataactgtctaaagcgtgctggaattaacaccgtacaagaactagcaaataaa
tctgaagaagatatgatgaaggtacgcaatcttggacgtaagtcgttagaagaagtaaaa
gtgaagcttaacgatttaggtcttggcttgcgagacgatgactaa
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