Vibrio mediterranei: BSZ05_24350
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Entry
BSZ05_24350 CDS
T04936
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ05_24350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsh03019
]
BSZ05_24350
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ05_24350
Messenger RNA biogenesis [BR:
vsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ05_24350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASI92894
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All DBs
Position
2:complement(1688863..1690113)
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AA seq
416 aa
AA seq
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MTDKTSPTTFADLGLIPTLVERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTA
AFSLPILQKICQQDKPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVF
GGVSANPQMLALRGGSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEEL
NKILALLPEKKQTLLFSATFPEKVTSLAQHLLSDPVEVQLQSAETSTLVQRVFSVNKGQK
TAVLAHLIKQHQWRQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFK
SGDIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYD
DYHHFKVIEKKNKFRLEREQVEGFEVDDDQSEAYFAPMKPRAKPAGTGKKKNKRNQ
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaaaacatctccaacaacattcgctgacctaggtctgattccaaccttagtt
gagcgactagaggagttggaatacagccaaccgactccaatccaatctcacaccattcct
tacctacttgaagggcgtgatcttgttggtggtgcgaatacgggttctggtaaaaccgcc
gcgttttcgctgccgattctgcaaaaaatctgtcagcaggacaaacctaacagtcgtcgt
ggcaacacggtttctcacctaattcttgttcctacgcgcgaactagcgtcacaggtggcg
tataacgtgaaatcgtactcatatcatctacgaaatgagatcaaaacggttgctgtattt
ggtggtgtatcagcaaaccctcaaatgctagcgcttcgaggtggcagcgacattgttgtg
gcaacacctggacgattacttgatctggtatcaagtaatgctattaagctagaccaagtg
caaacactagtactagatgaagcggaccggatgttgagcttgggctttacagaagagctc
aacaaaatccttgctttgttaccagagaaaaaacagacgttactattttcagcaaccttc
cctgagaaagtgactagtctggcacagcatttacttagcgaccctgttgaagtgcaattg
caaagtgctgagaccagtactctcgtgcaacgtgtgtttagcgtgaataaaggtcaaaag
acggcggtactcgcgcacttaatcaaacagcatcaatggcgacaagcgttaatctttgtt
aatgccaaaaatagctgtaaccacttagcacaaaagttatcaaaacgtggtatcactgca
gaggttttccatggtgataaagggcagggtgctcgtacacgtgtgctagaagggtttaaa
tctggcgacattcaagttttgatcgcaaccgacatcgcagctcgtggccttgacattgaa
aagctaccggtcgtgatcaactttgacctgccacgcagtcccgccgattatatgcaccgt
atcgggcgcagtggccgcgcaggagaggttggtcttggtttatctcttatcgattacgac
gactaccatcactttaaagtgatagaaaagaaaaataagttccgtcttgaacgcgaacaa
gttgagggatttgaagtggatgatgaccagagtgaagcttatttcgcacccatgaaacca
cgagcaaaaccggctggtacgggtaagaaaaagaacaaacgcaatcagtaa
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