Vibrio splendidus: LTQ54_05400
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Entry
LTQ54_05400 CDS
T08240
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LTQ54_05400 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_05400 (recD)
Enzymes [BR:
vsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LTQ54_05400 (recD)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LTQ54_05400 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
Helicase_RecD
RecD_N
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
DEAD
TrwB_AAD_bind
ABC_transp_aux
AAA_28
T2SSE
CbiA
PhoH
RNA_helicase
DUF87
AAA
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
UOE85444
LinkDB
All DBs
Position
1:complement(1151089..1153314)
Genome browser
AA seq
741 aa
AA seq
DB search
MTTTTNNTGMETANSVKPVSLIPEQLMDVLKFLADKGSIRQLDYQFARFISQQATSHSQE
VGFLAGVVSHELGKGHICTQLIQQYTVGPEQTADLAQLLGLYGETALQLNQKLLGIDWVA
VLQSSNLVGTTNDCIKPLMFDGQRVYLQRYWNYEVVLAETLNRLSKPVEFNSEQKKALTE
TLNQLFARSYHFLFNALAKAEANQQTSQVLRQQLVCDHLDIVNEQVLDWGAIDQAIVQAK
QVTDLDALDSLVPLSVCLNWQKVAAAVALSRRFAVISGGPGTGKTTTVTKLLSAMVEQSL
SQGKTPTIKLVAPTGKAAARLTESIGKAIEQLPLAPEVKANIPTESSTLHRLLGAIPNRA
EFRHNRRNPLHLDILVVDEASMVDLSMMYKLVDALPEHARLILLGDKDQLASVEAGAVLG
DICSFNSAGYSTAQGNLIAEMTGFDAIAKPRQDKAGSVNPPAIADSLCMLQKSYRFDARS
GIGQLAKAINNGSANQVDQVFAKGFSDIENHPLSSDSYNLMLRTLVNEYGAYLNRMNVPL
EELETQEARAKSVLDLFSQCRLLCSIREGDFGVKGLNHRIERALAARRLVNPHNDELWYH
GRPVMVTRNDHGLGLYNGDIGICMLEADSTTLESNSANSTPRLKVYFELPDGSVKAVLPS
RVPDHETAYAMTIHKSQGSEFDLTLMILPPDFSPILTRELIYTGITRAKKRLMMFSDTNV
LKRGIKVKTERVSGLGSRLTN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacgaccaataataccggcatggaaactgcgaactctgtaaagccagtttca
cttatccctgaacagctcatggatgtactcaagttcctagcggataagggctcaattcgt
cagctggattatcagtttgcccgttttatttctcagcaagcgacgagtcactctcaagag
gtagggtttctcgctggggtcgtgagccatgaattaggcaaggggcatatttgtactcag
cttatacagcagtatacggtaggccctgaacaaacggcggatcttgctcagttacttggg
ttgtacggtgaaactgccctgcaattgaatcaaaagttattaggtattgattgggtggcg
gtacttcaatcgtcaaacctagtaggtacaaccaatgactgtattaagccgctgatgttt
gatggacagcgtgtctacttacagcgttattggaactacgaagttgtgttggctgagacc
ttaaaccgtttaagtaagccagtagagttcaactctgagcagaaaaaagcgctaaccgaa
acgttgaatcagttattcgcacgcagttaccattttctgtttaatgccttagccaaggct
gaagcaaaccaacaaacgtctcaggtattacgccaacaactggtgtgtgaccatctagat
attgtgaatgagcaggttctagattggggcgcgatagaccaagcgattgttcaagccaag
caagtgacagatttagatgcgctggatagcctcgtgccgttatctgtctgtttgaactgg
caaaaggtcgcggcagcggtagcgttgagtcgtcgttttgcggtgatttctggtgggccg
ggtaccggtaaaacgaccacagtaaccaaattactgtcggcgatggtcgagcaatcgctc
agccaaggcaaaacaccgacgatcaagctagtggcaccgacaggtaaagcagcggcgcgt
ttaaccgagtcgattggcaaagcgattgaacagctgccattagcgcctgaagtaaaagcc
aacataccgactgaatccagtactttacataggttactcggcgcgattcctaaccgtgct
gagtttagacataaccgacgcaatccactccaccttgatatcttggtcgtggatgaagct
tctatggttgatctgtcgatgatgtataagctggtggatgcacttcctgagcacgcaagg
ctcatcttattgggtgataaagaccaactcgcttcagtagaggcaggtgctgtgctcggt
gatatctgttcattcaactctgcagggtacagcacagcgcaaggcaatttgattgcagag
atgacaggttttgatgcgatagctaaaccaaggcaagacaaagctggatcggtgaatccg
cctgcgattgctgatagcttgtgtatgctgcagaagagttaccgttttgatgcgcgttcc
ggtatcggccaactggcaaaagcgatcaataacggctctgctaatcaggttgatcaagtg
tttgcgaaagggttttcggatatcgaaaatcatcccctgtcgagtgacagctataacttg
atgctgcgaactttggttaatgagtatggtgcgtacctcaacagaatgaatgtgccgttg
gaagagctagagacccaagaagcacgcgcaaaatcagtgctcgacctgtttagtcaatgt
cgactattgtgttctattcgtgaaggggattttggtgttaaaggcctcaaccacagaatc
gaaagggcgcttgccgcaagacgcttggtgaatccgcacaacgatgaattgtggtatcac
gggcgaccagtcatggtgacgcgtaatgatcatggtttaggtttgtacaatggtgatatt
ggtatctgtatgctcgaagccgattcaacgactttagagtcaaatagtgcgaattccaca
cctagactgaaggtgtattttgagttgccagatggcagtgtgaaagccgtgcttccaagc
agagtccccgatcatgagaccgcttatgcgatgacgatacacaaatctcaaggcagtgaa
tttgatctgaccttaatgatcttgccgccggatttcagccctattttaacgcgagagctt
atctataccggtattacacgtgcgaagaaacgactgatgatgttcagtgatacaaatgtg
ttgaagcgtgggattaaggtgaaaacagagcgagtgagtggtttaggcagtaggttaacg
aattag
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